Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq351396 221 2e-52 seq162061 206 3e-48 seq664408 149 8e-31 seq597246 123 3e-23 seq217498 107 2e-18 seq623740 102 1e-16 seq63256 102 1e-16 seq466979 100 4e-16 seq178439 86.0 8e-12 seq634786 82.4 1e-10 >seq351396 Length=451 Score = 221 bits (244), Expect = 2e-52 Identities = 259/360 (72%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| ||||| || |||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 89 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 148 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 | ||| ||||||| | || ||||| || || | || ||||| |||| ||||| | Sbjct 149 ATTAGCTCGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTAC 208 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350 || |||||||| ||||| || || |||||||| ||||| || |||| ||| | || || Sbjct 209 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 268 Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410 ||||||||| || ||||| || | |||||||| Sbjct 269 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 328 Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470 ||| || ||||||||||| || || || || ||||||||||| || || || || || Sbjct 329 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATA 388 Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530 |||||||||||||| || || |||||||| | || ||||||| ||||||| || || Sbjct 389 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTC 448 >seq162061 Length=815 Score = 206 bits (228), Expect = 3e-48 Identities = 255/349 (73%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 102073 GTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATTGCT 102132 || ||||| |||||| || ||| | |||||||| || || || | || || || || Sbjct 562 GTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCTACGGTCGCTCCATGAATAGCG 503 Query 102133 GACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGCGTC 102192 | ||||| || | || | | || ||||| ||||||||||| |||||||| | |||| Sbjct 502 CATAGCAGAGCCGCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTC 443 Query 102193 CAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAACGAG 102252 || ||||| || || || | ||| || | ||||| |||||| ||||| || ||||| Sbjct 442 CAATTATGAAATCCTTGGAAGAAAAGGATGAATCGAAATATTGCTGCTACGCCAAAACTC 383 Query 102253 GGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAAACA 102312 |||||||||||||||| || || || || ||||| || || || ||| |||||||| Sbjct 382 GGCGCAAAGAACCAACCAGATTGCCCCAGTGGATAAATAAGGAATACAGAAACAAAAACC 323 Query 102313 GCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCCAAC 102372 ||||| || |||||||| | || ||||| || || || | | || ||| ||| | Sbjct 322 GCGATTGGACCAGAGAATGAGATTGCATTATAAGGCCGCAATTGAACAGACCGAGCAAGT 263 Query 102373 TCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAG 102421 || ||||| || | ||||||||| || || ||||| || |||||||||| Sbjct 262 TCAAATTGGCGTAACATGAAACCTATTAGTGCAAAAGCCCCGTGGAGAG 214 >seq664408 Length=200 Score = 149 bits (164), Expect = 8e-31 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 103583 CCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCG 103642 || ||||| || ||||| || || | ||||||||| || ||||| || ||||| || || Sbjct 2 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 61 Query 103643 GCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAG 103702 || ||||| || | ||| ||||||| | || || || || ||||||||| |||| ||| Sbjct 62 GCCTGGAATACAATCATAAAGTTGAAAATACCAGATATTCCTAAAGGCATACCATCAGAG 121 Query 103703 AACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCA 103762 || |||||||||| ||||| | |||||| || || | ||||||||||||||||| Sbjct 122 AAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCT 181 Query 103763 GAGTATGCGACA 103774 |||||||| ||| Sbjct 182 GAGTATGCAACA 193 >seq597246 Length=243 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 103759 AGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTC 103818 ||| |||||||| ||| ||||| || ||||| |||| |||| | | ||||||||| Sbjct 1 AGCTGAGTATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTC 60 Query 103819 ACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACC 103878 ||| |||||||| | | |||| | |||||| | || | || | ||||||| Sbjct 61 ACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACC 120 Query 103879 ACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACC 103938 ||| || || | ||||||||||| |||||| ||||||||||| || || ||||| | || Sbjct 121 ACCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCC 180 Query 103939 AATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTA 103989 || || || | |||| || ||||||||||| || ||||| || || Sbjct 181 GATCGCCGCCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATA 231 >seq217498 Length=656 Score = 107 bits (118), Expect = 2e-18 Identities = 160/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 103955 GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGGTTCA 104014 |||| || |||||||||| || ||||| || || | | ||||||| || || ||| Sbjct 523 GGAATAATAGCACCAGAGAGAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCA 464 Query 104015 CGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAAG-CAGATGGT 104073 ||||| || || ||||| || ||||| || || | ||| || | || || |||| | | Sbjct 463 CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAG-T 405 Query 104074 TGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGTTGTT 104133 ||| | ||| | ||| |||||||||| ||||||||||| || | || |||||||| | Sbjct 404 TGCGGTCAATAAAGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTC 345 Query 104134 TGTCGATGTAACCCACTCGCAGAAGTTATCCCACGAGGATTGT 104176 || || | ||| | ||||||| | ||||| ||| |||| Sbjct 344 AGTGCTAGTTATCCAGTTGCAGAAGCGACCCCAC-AGGCTTGT 303 >seq623740 Length=225 Score = 102 bits (112), Expect = 1e-16 Identities = 138/190 (73%), Gaps = 8/190 (4%) Strand=Plus/Plus Query 102162 AACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAG 102221 ||| ||||||||||| |||||||| | |||||| ||||| || || || | ||| || | Sbjct 1 AACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGAT 60 Query 102222 GAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGA-----CTGT 102276 ||||| |||||| ||||| || ||||| |||||||||||||||| | | | Sbjct 61 GAATCGAAATATTGCTGCTACGCCAAAACTCGGCGCAAAGAACCAACCGAATCGCCCCAC 120 Query 102277 CCGAGAGGATAGATGAGAAACACACTGAC--AAAAACAGCGATAGGCCCAGAGAACGCAA 102334 || || ||||| || || || ||| || |||||| ||||| | | |||||| | | Sbjct 121 CCCAGTGGATAAATAAGGAATACAGAAACAAAAAAACCGCGAT-TGACTAGAGAATGAGA 179 Query 102335 TAGCATTGTA 102344 | ||||| || Sbjct 180 TGGCATTATA 189 >seq63256 Length=1526 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 102304 ACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAAC 102363 |||||||| ||||| || ||||||| | || ||||| || || || | | || || Sbjct 211 ACAAAAACCGCGATTGGATCAGAGAATGAGATTGCATTATAAGGCCGCAATTGAACAGAC 152 Query 102364 CTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCC 102423 | ||| | || ||||| || | ||||||||| || || ||||| || ||||||||||| Sbjct 151 CGAGCAAGTTCAAATTGGCGTAACATGAAACCTATTAGTGCAAAAGCCCCGTGGAGAGCT 92 Query 102424 ACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGA 102483 ||||| | ||| | || || | || ||| | ||||||||||| ||||| || Sbjct 91 ACAAACGTCCATAAACCGCCTAACTGACACCAGCGAGTAAAATCTCCTTGTGCTTCCGGC 32 Query 102484 CCCCAAAGTAG 102494 ||||| ||||| Sbjct 31 CCCCATAGTAG 21 >seq466979 Length=342 Score = 100 bits (110), Expect = 4e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 101946 AAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGA 102005 ||| |||||||||||||| ||||| | ||||| ||| |||| |||||||||||| || Sbjct 118 AAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGA 177 Query 102006 CCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGT 102053 ||| || | ||| || || |||||||||||||| ||||| |||| || Sbjct 178 CCAAAAGCAGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGT 225 >seq178439 Length=759 Score = 86.0 bits (94), Expect = 8e-12 Identities = 108/149 (72%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 101731 ACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCGACTGGTGCCAACCATGCACGT 101790 ||||| ||||| |||| || |||||||| ||| | ||||| ||| |||| Sbjct 755 ACCTCCTCAGGGAATATAAGATTTTCATG------ATCCTAAGCTGCCATCCACCCACGA 702 Query 101791 AGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTCTCGAACTCTGGATCTTCTGCT 101850 | ||| ||||| || || || || || |||||||| ||||| || || ||||||| | | Sbjct 701 ATACCCTCATTTAAAAGAATATTTTTGGTGTAGAAAGTCTCAAATTCACGATCTTCCGTT 642 Query 101851 GCTCTGATCTCTTGGGATACAAAGTCATA 101879 || | ||| || | ||| ||||||||||| Sbjct 641 GCACGGATTTCCTAGGAAACAAAGTCATA 613 >seq634786 Length=218 Score = 82.4 bits (90), Expect = 1e-10 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 102588 ATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGT 102647 |||||| ||||| |||| || || || |||| ||| ||||| | |||| ||||||| Sbjct 21 ATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCCCCTAAAGCGAAATAAGCACA 80 Query 102648 GGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTC 102707 ||||| || | ||| |||||||| || ||||| || || || || | | | |||||| Sbjct 81 AGGAAAGAGCAATAGGCCAGACCATCCTACAAAAACGAAACGGTCCCTTCGTAACCAGTC 140 Query 102708 ATCCA 102712 ||||| Sbjct 141 ATCCA 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628238173874400