Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq351396 241 4e-59 seq664408 149 2e-31 seq597246 105 2e-18 seq472319 105 2e-18 seq71309 86.0 2e-12 >seq351396 Length=451 Score = 241 bits (266), Expect = 4e-59 Identities = 249/326 (76%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||||||||| || || || || ||||| || || | ||||| || Sbjct 93 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 152 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 || ||||| | || |||||||| || || || || | || | | | | | | |||| Sbjct 153 GCTCGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGAT 212 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| | |||||||||||| ||| | || | |||| ||| Sbjct 213 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 272 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 || || ||||| |||||||| ||||| | ||||| || | | ||| || || || || Sbjct 273 CAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAA 332 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| || |||||||| |||||||| |||||| Sbjct 333 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTC 392 Query 21771 TCTTCCTCTTGACCAAACTTGTAACC 21796 ||||||||||||||||| |||||||| Sbjct 393 TCTTCCTCTTGACCAAATTTGTAACC 418 >seq664408 Length=200 Score = 149 bits (164), Expect = 2e-31 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938 || || ||||| || || ||||| | |||||| || ||||||||||| || |||||||| Sbjct 2 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 61 Query 21939 GCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAA 21998 |||||||| || | ||| ||||||| | || ||||| || || |||||| ||||||| Sbjct 62 GCCTGGAATACAATCATAAAGTTGAAAATACCAGATATTCCTAAAGGCATACCATCAGAG 121 Query 21999 AAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCA 22058 || || || |||| || |||| | ||| |||||||| ||||| || |||||||| Sbjct 122 AAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCT 181 Query 22059 GAGTACGCAACA 22070 ||||| |||||| Sbjct 182 GAGTATGCAACA 193 >seq597246 Length=243 Score = 105 bits (116), Expect = 2e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 22055 AGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTC 22114 ||| ||||| |||||| ||||| || | ||| || | || | |||||||||||||| Sbjct 1 AGCTGAGTATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTC 60 Query 22115 TCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACC 22174 || ||||| ||| | || |||| | |||||| | || | || | | ||||| Sbjct 61 ACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACC 120 Query 22175 GCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCC 22234 || ||||| | ||| ||||||| | |||||||||||||||||||| ||||| | ||| Sbjct 121 ACCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCC 180 Query 22235 GATGGC 22240 ||| || Sbjct 181 GATCGC 186 >seq472319 Length=337 Score = 105 bits (116), Expect = 2e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 21681 AAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAA 21740 ||||| || | | ||| || || || || ||||||||||||||||| | | |||||| Sbjct 227 AAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATTGGCCAAAA 286 Query 21741 TAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTG 21791 || || |||||||| |||||||| ||| ||||||||||||||||||| ||| Sbjct 287 TAACCATGAGCAGCCACAATATTATAAATCTCTTCCTCTTGACCAAATTTG 337 >seq71309 Length=1427 Score = 86.0 bits (94), Expect = 2e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 21672 GCAG-CAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAG 21730 |||| ||||||| || || | | ||| || || || || | |||||||||||||| | Sbjct 800 GCAGACAAGAAA-AAGTGGAAAGAACGTGAGTTGTTGAAACATGCATATTGGAAGATTAA 742 Query 21731 CCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTT 21790 || |||||| || || || |||||||| ||||||||||||||||||||||| || Sbjct 741 TCGGAAAAAATAACCATGCACAAACACAATATTATAAGTCTCTTCCTCTTGACCAAAATT 682 Query 21791 GTAA 21794 |||| Sbjct 681 GTAA 678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145051364960400