Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq37927 86.0 3e-12 >seq37927 Length=1985 Score = 86.0 bits (94), Expect = 3e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||||||||| || |||||||||||||| || || | |||||| ||||||||||| | Sbjct 1594 TACCTTTTCTCTTGCCTCCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGTA 1535 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| || || | |||| | ||| ||| ||||| | |||| | || || | | Sbjct 1534 GCATGGGGACAATTCCATTGGAAGTTCCATTTGTTCCTCGAATGTAACTGCCAGTAGCAC 1475 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 | || |||| ||| | ||||||||| ||||| |||| || | ||||| || Sbjct 1474 GGACATTGTGA-ATTGAGACACCGATTCCTCCAGCAGATTTGCTTATGGAAGCACATTCA 1416 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||||| | ||||| | || ||||| ||||||| Sbjct 1415 GAGAGAGTATCATAGATTCCCTCAATACTATCGTCTTTCAT 1375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 250985550843500