Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq351396 187 3e-42 seq597246 152 6e-32 seq664408 143 3e-29 seq162061 123 3e-23 seq41969 104 3e-17 >seq351396 Length=451 Score = 187 bits (206), Expect = 3e-42 Identities = 237/326 (73%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 93 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 152 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 |||| ||| | | |||| |||| || | | || | | |||||| || ||| Sbjct 153 GCTCGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGAT 212 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| || ||||||||||| | |||||| ||||| || | ||||| | || || ||| Sbjct 213 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 272 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288 || | | ||| ||||| || | || | ||||||||| | | | ||||||||||| Sbjct 273 CAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAA 332 Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348 |||||| |||||||| | || ||||| ||||| || || || || || || || || Sbjct 333 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTC 392 Query 124349 TCTTCTTCTTGTCCGAACTTATAACC 124374 ||||| ||||| || || || ||||| Sbjct 393 TCTTCCTCTTGACCAAATTTGTAACC 418 >seq597246 Length=243 Score = 152 bits (168), Expect = 6e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 124634 GCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGT 124693 ||||| || |||||| |||||||||||||| || || | | | |||||||||| Sbjct 2 GCTGAGTATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCA 61 Query 124694 CTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCA 124753 | ||||| || | | ||||| | |||||| | || | | || |||||||||| Sbjct 62 CGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCA 121 Query 124754 CCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCG 124813 ||||| || ||||| |||||||||| ||| |||||||| |||||||| ||||| | |||| Sbjct 122 CCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCG 181 Query 124814 ATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAA 124873 || || || | |||| || ||||||||||| || ||||| ||||| | |||||| Sbjct 182 ATCGCCGCCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAA 241 Query 124874 CC 124875 || Sbjct 242 CC 243 >seq664408 Length=200 Score = 143 bits (158), Expect = 3e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 124457 CCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCT 124516 || ||||| | || ||||| ||| ||||||||| |||||||| || ||||| |||||| Sbjct 2 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 61 Query 124517 GCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAG 124576 || ||||| || | ||||||||||||| |||| || || || | ||||||||||||||| Sbjct 62 GCCTGGAATACAATCATAAAGTTGAAAATACCAGATATTCCTAAAGGCATACCATCAGAG 121 Query 124577 AATGAACCCTGACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCT 124636 || || ||||||| ||||| | ||||| ||||| ||||| | || || ||| Sbjct 122 AAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCT 181 Query 124637 GAATAAGCAACA 124648 || || |||||| Sbjct 182 GAGTATGCAACA 193 >seq162061 Length=815 Score = 123 bits (136), Expect = 3e-23 Identities = 215/312 (69%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 123277 ATACAATGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTAT 123336 ||| | ||| |||| || || || |||||||| || ||||| | || | |||| || Sbjct 537 ATAGAGTGTTTTCT--ACGGTCGCTCCATGAATAGCGCATAGCAGAGCCGCGCCTAATAC 480 Query 123337 TCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAA 123396 ||| ||||| |||||||| |||||||| ||||| || || || || ||||| | ||| Sbjct 479 TCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAA 420 Query 123397 TAAGATATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTG 123456 | ||| | ||||| |||||||| || || || || || |||||||||| || Sbjct 419 AAGGATGAATCGAAATATTGCTGCTACGCCAAAACTCGGCGCAAAGAACCAACCAGATTG 360 Query 123457 ACCTAGTGGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAG 123516 || |||||||| || || || | | || || ||||| | ||||||||| || Sbjct 359 CCCCAGTGGATAAATAAGGAATACAGAAACAAAAACCGCGATTGGACCAGAGAATGAGAT 300 Query 123517 TGCGTTGTAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACC 123576 ||| || ||||| | | ||| | || | |||||||| | | ||||||||| Sbjct 299 TGCATTATAAGGCCGCAATTGAACAGACCGAGCAAGTTCAAATTGGCGTAACATGAAACC 240 Query 123577 TATGAGTCCAAA 123588 ||| ||| |||| Sbjct 239 TATTAGTGCAAA 228 >seq41969 Length=1890 Score = 104 bits (114), Expect = 3e-17 Identities = 151/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || ||| ||||| || || Sbjct 356 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTG 415 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || || |||||| || | || || || || | |||||| || || || ||||| Sbjct 416 ATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAA 475 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || | ||||| ||||| | || || || || ||||| || || || | Sbjct 476 AGTCTCAAATTCACGATCTTCCGCTGCACGGAT-TCCTGGGAAACAAAATCATAGGCACG 534 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAG 123077 | ||| || || || ||||| | || |||| Sbjct 535 TAAGTTCAGAGCCAGGCCTACTACGCCAATAG 566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574176935573600