Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq162061 230 3e-55 seq351396 226 4e-54 seq664408 161 1e-34 seq597246 132 6e-26 seq217498 118 1e-21 seq623740 104 3e-17 seq63256 102 1e-16 seq472319 91.5 2e-13 seq41969 86.0 8e-12 seq71309 84.2 3e-11 >seq162061 Length=815 Score = 230 bits (254), Expect = 3e-55 Identities = 251/330 (76%), Gaps = 4/330 (1%) Strand=Plus/Minus Query 23777 ATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTAT 23836 ||| ||||| |||| || || ||||||||||||| | || || || | || | || Sbjct 537 ATAGAGTGTTTTCT--ACGGTCGCTCCATGAATAGCGCATAGCAGAGCCGCGCCTAATAC 480 Query 23837 ACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAA 23896 || ||||||||||||||||| || ||||| | |||||| |||||||| || |||| ||| Sbjct 479 TCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAA 420 Query 23897 GAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTG 23956 || | ||| | || || || || || || ||||||||||||||||||||| || || Sbjct 419 AAGGATGAATCGAAATATTGCTGCTACGCCAAAACTCGGCGCAAAGAACCAACCAGATTG 360 Query 23957 TCCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAAT 24016 |||| ||||| || ||||||||||| || || || || || |||||||| || | || Sbjct 359 CCCCAGTGGATAAATAAGGAATACAGAAACAAAAACCGCGATTGGACCAGAGAATGAGAT 300 Query 24017 CGCATTGTAGGGACGGATTCCAATTAGA-CGTGCCAGTTCAAACTGACGTAACATAAAAC 24075 ||||| || || || | | || ||| || || |||||||| || |||||||| |||| Sbjct 299 TGCATTATAAGGCCGCAATTGAA-CAGACCGAGCAAGTTCAAATTGGCGTAACATGAAAC 241 Query 24076 CTATAAGTGCAAAGGCACCGTGGAGAGCAA 24105 |||| |||||||| || |||||||||| || Sbjct 240 CTATTAGTGCAAAAGCCCCGTGGAGAGAAA 211 >seq351396 Length=451 Score = 226 bits (250), Expect = 4e-54 Identities = 266/360 (74%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789 |||||| || || | || || || || || || | |||||| || || || | ||||| Sbjct 89 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 148 Query 26790 ACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCAC 26849 | ||| ||||||| | || |||||||| || | || ||||| || ||||| || Sbjct 149 ATTAGCTCGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTAC 208 Query 26850 AGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGT 26909 ||| || ||||| |||||||| || || ||||||||||| || | ||| | || || Sbjct 209 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 268 Query 26910 GAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTT 26969 ||||||||| || || || ||||| ||||| | ||||||||| || ||||| |||||||| Sbjct 269 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 328 Query 26970 GAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTA 27029 ||| ||||||||||||||| || || || || || ||||| || || || || || || Sbjct 329 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATA 388 Query 27030 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTC 27089 |||||||| |||||||| || || ||||| | || || ||| ||||||| || || Sbjct 389 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTC 448 >seq664408 Length=200 Score = 161 bits (178), Expect = 1e-34 Identities = 151/192 (79%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 27142 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCT 27201 || |||||||| ||||| ||||| | ||||||||| || ||||||||||| ||||| ||| Sbjct 2 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 61 Query 27202 GCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAG 27261 ||||||||||||| ||| |||| ||| ||||||| || || | ||||||| |||| ||| Sbjct 62 GCCTGGAATACAATCATAAAGTTGAAAATACCAGATATTCCTAAAGGCATACCATCAGAG 121 Query 27262 AAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCA 27321 || |||||||| | ||| || | | ||| || ||| | ||||| || || ||||| Sbjct 122 AAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCT 181 Query 27322 GAATATGCTACA 27333 || ||||| ||| Sbjct 182 GAGTATGCAACA 193 >seq597246 Length=243 Score = 132 bits (146), Expect = 6e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27318 AGCAGAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTC 27377 ||| || ||||| ||| ||||| ||||||||||| ||||| | ||||||||||| Sbjct 1 AGCTGAGTATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTC 60 Query 27378 ACGTCCCATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACC 27437 ||| ||||||||| | | || | | |||||| | || | || | ||||||| Sbjct 61 ACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACC 120 Query 27438 ACCGTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACC 27497 ||| || || ||||||||||| | ||||| |||||||| |||||||| ||||| | || Sbjct 121 ACCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCC 180 Query 27498 GATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATA 27548 ||| || ||| | || | || |||||||| || || ||||| ||||| Sbjct 181 GATCGCCGCCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATA 231 >seq217498 Length=656 Score = 118 bits (130), Expect = 1e-21 Identities = 132/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 27523 GCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCG 27582 |||||||| | || ||||| ||||| | | ||||||| ||| || ||||||||||| Sbjct 514 GCACCAGAGAGAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCA 455 Query 27583 TCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAG-CAGACAGTTGCTGCTAA 27641 |||||||| || || || || |||||||| |||| ||| || |||| |||||| | || Sbjct 454 TCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA-AGTTGCGGTCAA 396 Query 27642 CAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTTGTTAGT 27695 | || |||||||||| ||||||||||| || | || | |||||| | ||| Sbjct 395 TAAAGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCAGT 342 >seq623740 Length=225 Score = 104 bits (114), Expect = 3e-17 Identities = 115/152 (76%), Gaps = 5/152 (3%) Strand=Plus/Plus Query 23843 AACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAG 23902 ||||||||||||||| || ||||| | |||||| |||||||| || |||| ||| || | Sbjct 1 AACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGAT 60 Query 23903 GAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAA--GA---TGACTGT 23957 ||| | || || || || || || ||||||||||||||||||||| || | Sbjct 61 GAATCGAAATATTGCTGCTACGCCAAAACTCGGCGCAAAGAACCAACCGAATCGCCCCAC 120 Query 23958 CCCAAAGGATAGATGAGGAATACAGACACGAA 23989 |||| ||||| || ||||||||||| || || Sbjct 121 CCCAGTGGATAAATAAGGAATACAGAAACAAA 152 >seq63256 Length=1526 Score = 102 bits (112), Expect = 1e-16 Identities = 146/202 (72%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 23976 AATA-CAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGAT 24034 |||| |||| || || || || || ||| |||| || | || ||||| || || || | Sbjct 221 AATATCAGAAACAAAAACCGCGATTGGATCAGAGAATGAGATTGCATTATAAGGCCGCAA 162 Query 24035 TCCAATTAGAC-GTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCAC 24093 | || |||| | || |||||||| || |||||||| |||||||| |||||||| || | Sbjct 161 TTGAAC-AGACCGAGCAAGTTCAAATTGGCGTAACATGAAACCTATTAGTGCAAAAGCCC 103 Query 24094 CGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTT 24153 |||||||||| ||||| | ||| | || || | || ||| || ||| || |||| Sbjct 102 CGTGGAGAGCTACAAACGTCCATAAACCGCCTAACTGACACCAGCGAGTAAAATCTCCTT 43 Query 24154 GAGACTCAGGACCCCAAAGTAG 24175 | | || || ||||| ||||| Sbjct 42 GTGCTTCCGGCCCCCATAGTAG 21 >seq472319 Length=337 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 26944 AAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAG 27003 |||||||| || ||||| ||||||||||| ||||||||||||||| || | || || Sbjct 227 AAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATTGGCCAAAA 286 Query 27004 TAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTT 27053 || ||||| || || || || || || ||||||| |||||||| || || Sbjct 287 TAACCATGAGCAGCCACAATATTATAAATCTCTTCCTCTTGACCAAATTT 336 >seq41969 Length=1890 Score = 86.0 bits (94), Expect = 8e-12 Identities = 150/216 (69%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCA---ATTACAGGAAAGTTTTCGTGTG 23442 || ||||||| || || | ||| || | |||||| | || | || ||||| || | Sbjct 355 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGA---TTTTCATGAG 411 Query 23443 GTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGT 23502 | || || || |||||| |||| | || | ||| || | ||||||||| |||| Sbjct 412 GCTGATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGT 471 Query 23503 AGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAG 23562 |||| |||||| | || |||||| || ||||| || || || ||||||||||| | Sbjct 472 AGAAAGTCTCAAATTCACGATCTTCCGCTGCACGGAT-TCCTGGGAAACAAAATCATAGG 530 Query 23563 CACGAAGATTAAGAGCAAGCCCAATGATGCCAATAG 23598 |||| | || ||||| || || | | |||||||| Sbjct 531 CACGTAAGTTCAGAGCCAGGCCTACTACGCCAATAG 566 >seq71309 Length=1427 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 26934 TGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATCAA 26993 ||||| | ||| ||||| || ||||||||||||||||| | |||||||||||||| || Sbjct 801 TGCAGACAAGAAAAAGTGGAAAGAACGTGAGTTGTTGAAACATGCATATTGGAAGATTAA 742 Query 26994 ACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTT 27053 || || || ||||| | || || || || |||||||| |||||||| || || Sbjct 741 TCGGAAAAAATAACCATGCACAAACACAATATTATAAGTCTCTTCCTCTTGACCAAAATT 682 Query 27054 ATAA 27057 ||| Sbjct 681 GTAA 678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 659952661757600