Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq88849 118 1e-21 seq12173 113 5e-20 seq625560 82.4 9e-11 seq7224 82.4 9e-11 >seq88849 Length=1251 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||| |||||| | | ||||| || || || ||||| ||||||||||| || || || Sbjct 492 CTTCGCGGAGCGCATCGTGGCGTTCGCATGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 433 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||||||||| |||||||| ||||| |||||| || || Sbjct 432 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAACGA 373 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || || || ||||| |||||| Sbjct 372 GCTCATCTCACGCGACGAGGGGCTCCAC 345 >seq12173 Length=3197 Score = 113 bits (124), Expect = 5e-20 Identities = 304/456 (67%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||||||||| || | || || || || || ||||| || |||||||| || || || Sbjct 1045 CTTCGCCGAGCGACTCGTCGCCTTCGCATGCGTCGAGGGCATATTCTTCTCGGGCTCCTT 1104 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||||||||| |||||||| ||||| |||||| || | Sbjct 1105 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAACGT 1164 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAA--GACT 65247 || || || || || ||||| | |||| || || ||| || ||| || | | || Sbjct 1165 GCTCATCTCGCGTGACGAGGGCCGCCACTGCGACTTCGCC-TG--CCTCCTCTACGGCCT 1221 Query 65248 TTGC----GTAA--TAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTT 65301 | | || | || | | | ||| ||| || ||||| || || || Sbjct 1222 CCTCAACAGCAAGCTTGA-CGAGTCCCG----CGTCCGCGAGATCGTCGCCGACGCCGTC 1276 Query 65302 GAGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCT 65361 || || |||| | |||||||| ||||| ||||| || ||| |||| |||||| | Sbjct 1277 GACATCGAGAGGGAGTTCATCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCC 1336 Query 65362 GAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTG 65421 | ||| | |||||||||||| || | || || || ||| | | | || || Sbjct 1337 GGCCTCATGGGCCAGTACATTGAGTTCGTCGCAGACCGCCTGCTC-ATGGCGCTCGGCTG 1395 Query 65422 C-CACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGG 65480 | | || | ||||| || || || |||| ||||| ||| ||| | || Sbjct 1396 CGCCAAGATGTACAACGCCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGG 1455 Query 65481 GAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||||||||||||||||||| || || ||||| Sbjct 1456 CAAGACCAACTTCTTTGAGAAGCGTGTCGGCGACTA 1491 >seq625560 Length=224 Score = 82.4 bits (90), Expect = 9e-11 Identities = 137/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | || || ||||| ||||| ||||| | ||||| || || | ||| Sbjct 28 TTCGTCGAGCTCTTCGTCGGTGTTGGTGCGTCCAGGGTGAGGGATCTGTTCGAGAAGGCC 87 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || || |||||||||||||||||||| || || || | ||| || Sbjct 88 AAGGCCAAGGCGCCCTGCATCGTCTTCATTGATGAGATTGACGCCGTCGGGAGGCAGCGT 147 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | ||||| ||| || | ||||| ||||| || || || || || || || |||| Sbjct 148 GGTGCTGGGATGGGCGGC--GGGAATGATGAGAGGGAGCAGACCATCAACCAGCTTCTCA 205 Query 175574 CCGAGATGGATGGCTT 175589 | |||||||||||||| Sbjct 206 CGGAGATGGATGGCTT 221 >seq7224 Length=3831 Score = 82.4 bits (90), Expect = 9e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || |||||||||||||||||||| |||||| | || || |||||||| | | ||| Sbjct 2746 TTCGTGGAGATGTTTGTTGGTGTTGGTGCCTCCCGTGTCCGTGATCTCTTCAAGAAGGCC 2687 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| |||||||| || || | ||| | Sbjct 2686 AAGGAGAATGCTCCTTGCATCGTGTTTGTTGATGAAATTGATGCCGTTGGAAGGCAGAGA 2627 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | ||||| || || || || || | ||||| || | || Sbjct 2626 GGAACAGGTATTGGTGGTGGGAATGATGAAAGGGAGCAGACTCTCAATCAGCTGTTGACT 2567 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAA 175628 ||||||||||||||||| | ||||| || | ||| |||| ||||| || Sbjct 2566 GAGATGGATGGCTTTGAGGGAAACACTGGAATCATTGTTGTTGCTGCCACCAA 2514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591601815798400