Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq351396 223 4e-53 seq664408 134 2e-26 seq597246 120 4e-22 seq217498 109 7e-19 seq59528 100 3e-16 seq472319 95.1 1e-14 seq71309 89.7 6e-13 >seq351396 Length=451 Score = 223 bits (246), Expect = 4e-53 Identities = 267/360 (74%), Gaps = 2/360 (1%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 93 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 152 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 |||| ||| | | ||| |||| ||| ||| | ||| | | |||||| || ||| Sbjct 153 GCTCGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGAT 212 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || || || ||||| || ||||| || | |||||| | || ||| ||| Sbjct 213 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 272 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 || | | ||| || || | | ||| | ||||||||| | | | | |||||| ||| Sbjct 273 CAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAA 332 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | ||||| ||||||||||||| ||||| || ||||||||||| ||||||||||| || Sbjct 333 CTA-GCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGT 391 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 |||||| ||||||||||| || ||||| | || ||| || | |||||| || || || Sbjct 392 CTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTCCCT 451 >seq664408 Length=200 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 8299 CCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCT 8358 || ||||| | ||| ||||| ||| ||| ||||| ||||||||||| ||||| |||||| Sbjct 2 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 61 Query 8359 GCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAG 8418 || |||||||| | ||| ||||| || ||||||| || |||| |||||| ||||||||| Sbjct 62 GCCTGGAATACAATCATAAAGTTGAAAATACCAGATATTCCTAAAGGCATACCATCAGAG 121 Query 8419 AATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCA 8478 || || ||||||| || || | ||||| || || |||||| | || ||||| Sbjct 122 AAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCT 181 Query 8479 CTATATGCTACA 8490 ||||| ||| Sbjct 182 GAGTATGCAACA 193 >seq597246 Length=243 Score = 120 bits (132), Expect = 4e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8482 TATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCC 8541 ||||| ||| ||||| || | |||||| || ||| | | ||||||| | |||| Sbjct 8 TATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCACGACCC 67 Query 8542 ATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTA 8601 || ||| || | |||| | |||||| | | || | || ||| ||||| || || Sbjct 68 ATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTG 127 Query 8602 TACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCG 8661 || ||||||||||| | | |||||||||||||| || || ||||| ||||| || || Sbjct 128 TATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCC 187 Query 8662 TTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACC 8717 |||| |||| | |||||||||||| || ||||||||||| | || ||||| Sbjct 188 GCCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACC 243 >seq217498 Length=656 Score = 109 bits (120), Expect = 7e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 8664 GGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAAC 8723 ||||| |||| | ||||||||||| || ||||||||||| | || ||||| | ||| Sbjct 530 GGAAGTAGGAATAATAGCACCAGAGAGAATATTGTTTCCATAAAGTAAAGAACCAGAAAC 471 Query 8724 AGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCA 8783 ||| ||||||||||| || ||||| || || || ||||| || || || | ||||| Sbjct 470 AGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATAC 411 Query 8784 AGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCT 8843 || || || | || || ||| ||||| | ||| || ||||| |||| ||||| | Sbjct 410 AGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACG 351 Query 8844 GTTGTTTGTACTTGTAACCCACTCGCAAAA 8873 ||| | || || || | ||| | ||| || Sbjct 350 GTTTTCAGTGCTAGTTATCCAGTTGCAGAA 321 >seq59528 Length=1577 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 8171 CAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACT 8230 |||| ||||||||||| |||||||| ||||||||||| || ||||| | || ||| | Sbjct 562 CAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATT 503 Query 8231 CTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGA 8290 | | |||| | | || ||||| | | ||| || || || ||||| ||||||||||| | Sbjct 502 CATTTTCAATAATTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTAA 443 Query 8291 AGAGTGATCCACCGAACATACCTGC 8315 | || || || ||||| | ||| || Sbjct 442 ATAGGGAGCCGCCGAATACACCAGC 418 >seq472319 Length=337 Score = 95.1 bits (104), Expect = 1e-14 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 |||||| |||| | ||||| |||||||||||| ||||| || ||||||||||| |||| Sbjct 247 GTTGTTGAAACTA-GCATATTGGAAGATTAATTGGCCAAAATAACCATGAGCAGCCACAA 305 Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTT 8210 ||||||| ||||||| ||||||||||| || Sbjct 306 TATTATAAATCTCTTCCTCTTGACCAAATTT 336 >seq71309 Length=1427 Score = 89.7 bits (98), Expect = 6e-13 Identities = 130/184 (71%), Gaps = 10/184 (5%) Strand=Plus/Minus Query 8121 GTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAAT 8180 |||||| || ||||||| ||||||||||||| ||| || ||||| || ||||| Sbjct 771 GTTGTTGAAACATGCATATTGGAAGATTAATCGGAAAAAATAACCATGCACAAACACAAT 712 Query 8181 ATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGT 8240 |||||| |||||||| ||||||||||| || ||| | | || ||| || | |||| | Sbjct 711 ATTATAAGTCTCTTCCTCTTGACCAAAATTGTAAACCTCATT---AGATTCATTTTCAAT 655 Query 8241 TGTCTCTCTGATTAGAGAAGATGT-------AACTAAAGAACCGTGCATAGCACTGAAGA 8293 ||| || |||| | | || || || || ||||| || |||||||| || | Sbjct 654 TGTTTCCTTGATCAAACTCGAGGTTACCAAGAAGCAAGGAACCATGTATAGCACTAAATA 595 Query 8294 GTGA 8297 | || Sbjct 594 GGGA 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610733959829600