Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq351396 262 4e-65 seq162061 185 1e-41 seq597246 140 4e-28 seq217498 127 2e-24 seq632425 93.3 5e-14 seq623740 93.3 5e-14 seq63256 93.3 5e-14 seq466979 89.7 6e-13 seq472319 84.2 2e-11 seq557757 82.4 8e-11 >seq351396 Length=451 Score = 262 bits (290), Expect = 4e-65 Identities = 276/363 (76%), Gaps = 0/363 (0%) Strand=Plus/Minus Query 166393 AGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAA 166452 || || || ||||||| ||||| || | |||||||| || || ||||| ||||| Sbjct 451 AGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAG 392 Query 166453 ACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 166512 || || || || || || ||||||||||| || || || || ||||||||||| ||| Sbjct 391 ACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 332 Query 166513 TTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 166572 ||||||||||| || || || ||||||||| | ||||| |||||||| || || |||||| Sbjct 331 TTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGG 272 Query 166573 TTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 166632 ||||| || | || | || ||||| |||||||| || |||||||| |||||||| Sbjct 271 TTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 212 Query 166633 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCT 166692 || | ||||| |||| ||||| || | || || ||||| ||| | | ||||| ||| Sbjct 211 TCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCT 152 Query 166693 GGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCT 166752 ||| ||||||||||| ||||| || ||||| || ||||||||||| || ||||| ||| Sbjct 151 AATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 92 Query 166753 GCT 166755 ||| Sbjct 91 GCT 89 >seq162061 Length=815 Score = 185 bits (204), Expect = 1e-41 Identities = 244/336 (73%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 167317 CTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGC-CT 167375 |||||||| || ||||| || || ||||||||| | || || |||||||||||||| || Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 167376 GATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAG 167435 | | | | || || || ||||| || | ||||||||||| || || || || ||| Sbjct 276 GTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTC 334 Query 167436 CGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGT 167495 || |||||| | ||||| || || ||| | ||||||||||| ||| || || || Sbjct 335 TGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 394 Query 167496 CGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCC 167555 || || || || |||||| |||| ||| |||||||||| || || ||||| |||| || Sbjct 395 AGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 167556 ATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGG 167615 ||||||||||||||| || || || | | || | || |||| | || || ||||| Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 167616 TGTTACAGTAGAGAATACTTTGTATGAAGATGGTGA 167651 | || ||||| || ||| | | ||| || ||||| Sbjct 515 AGCGACCGTAGAAAACACTCTATTTGAGGACGGTGA 550 >seq597246 Length=243 Score = 140 bits (154), Expect = 4e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 165925 GGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCA 165984 |||||| | | ||||| ||||| || ||||||||||| || |||| |||| || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 165985 ATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAAC 166044 || || | ||||| || || || |||||||| ||||| |||| || ||| | || || Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 166045 GGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGT 166104 |||||||||| | || |||| | |||||| | |||| | | || |||||| Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 64 Query 166105 CGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCA 166164 |||||||||||||| || |||| | ||||||||||| ||||| |||||| |||||| Sbjct 63 CGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCA 4 Query 166165 GC 166166 || Sbjct 3 GC 2 >seq217498 Length=656 Score = 127 bits (140), Expect = 2e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 ||||||| | ||| | || ||||| | |||||||| || |||| ||||| ||| | Sbjct 320 CTTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 379 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 |||||| || ||| | ||| | |||||| |||| || || |||||||||||||||| | Sbjct 380 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCC 438 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | || || || || || || || ||||| || || |||||||| | | ||||| |||| Sbjct 439 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 498 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCC 165978 | || |||||||||| || |||| ||||| Sbjct 499 ATATTCTCTCTGGTGCTATTATTCCTACTTCC 530 >seq632425 Length=219 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 18118 CCTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGT 18177 || ||||| |||||||||||||||| || ||||| ||| ||||||| ||| ||||||| Sbjct 118 CCCCCCTTG-TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGACTGGTCGT 176 Query 18178 AGGTTCAAATCCTACCTGGGGAG 18200 |||||| |||||||| ||||||| Sbjct 177 AGGTTCGAATCCTACTTGGGGAG 199 >seq623740 Length=225 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 167470 TGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAA 167529 ||||||||||| ||| || || || || || || || |||||| |||| ||| ||||| Sbjct 105 TGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAATATTTCGATTCATCCTTTTCTTCCAA 46 Query 167530 GGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGT 167573 ||||| || || ||||| |||| ||||||||||||||||| || Sbjct 45 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGT 2 >seq63256 Length=1526 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 167230 CATTCTTTACTTCTTCTATGGGGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAA 167289 || ||||| | || |||||||| || ||| | ||||| ||||| | ||| || Sbjct 9 CACTCTTTGTTGCTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAG 68 Query 167290 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATG 167349 | || || | ||| | ||||| || |||||||| || ||||| || || ||||||||| Sbjct 69 TTAGGCGGTTTATGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATG 128 Query 167350 CTTCGACAGTTTGAACTTGCTC-GCCTGATTGGTATCCGTCCCTACAATGCTATTGCTTT 167408 | || || ||||||||||||| | ||| || | || || || ||||| || | || Sbjct 129 TTACGCCAATTTGAACTTGCTCGGTCTG-TTCAATTGCGGCCTTATAATGCAATCTCATT 187 Query 167409 CTCTGGTCCTATTGCTGTCTTCGTT 167433 ||||| ||| || || || || ||| Sbjct 188 CTCTGATCCAATCGCGGTTTTTGTT 212 >seq466979 Length=342 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 167683 ACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTC 167742 ||||| | ||||| |||||||||||||| || || ||| | || ||||| || ||||| Sbjct 225 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCTTT 166 Query 167743 GGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATT 167789 || ||||||| ||| ||||| ||| | |||||||||||| |||| Sbjct 165 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATT 119 >seq472319 Length=337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 166431 CAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCG 166490 ||| || || ||||| ||||| | || || || || || ||||||||||| || || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 166491 TTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTT 166541 || ||||||||||| ||| ||||||||||| || || || |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq557757 Length=269 Score = 82.4 bits (90), Expect = 8e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 161245 GTAGCTCAGCGGATAGAGCAACCGCCTTCTAAGCGGTTGGTCGCAGGTTCAAATCCTGCC 161304 ||||||||| ||||||||| ||||||| ||||||||| |||||||||||| | ||||||| Sbjct 39 GTAGCTCAGTGGATAGAGCGACCGCCTCCTAAGCGGTAGGTCGCAGGTTCGATTCCTGCC 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556574347592000