Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq351396 241 4e-59 seq664408 149 2e-31 seq597246 105 2e-18 seq472319 105 2e-18 seq71309 86.0 2e-12 >seq351396 Length=451 Score = 241 bits (266), Expect = 4e-59 Identities = 249/326 (76%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 |||||||| ||||||||||||||||||||||| |||||||| |||||||| || |||||| Sbjct 418 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 359 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010 || || | ||||||||||||||||| || || || || ||| | | || ||||| | Sbjct 358 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 299 Query 42011 GCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTC 42070 ||||| |||||||| ||||| || ||||| |||| | || | ||| ||||||||| Sbjct 298 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 239 Query 42071 AACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAAC 42130 ||| | ||||||||||| || ||||||||| | | | | | | || | || || || Sbjct 238 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 179 Query 42131 ACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAAC 42190 || |||||||| || | ||||| || || ||||| | || || ||||| || || || Sbjct 178 ACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 119 Query 42191 GCACACAACTTCCCGCTTGACCTTGC 42216 || ||||||||||| || ||||| || Sbjct 118 GCTCACAACTTCCCTCTAGACCTAGC 93 >seq664408 Length=200 Score = 149 bits (164), Expect = 2e-31 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 41617 TGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGG 41676 |||||| ||||| |||||||| || ||||| |||||||| ||| | |||| || |||| Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 41677 ACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCT 41736 || || || ||||||| |||||| || || ||||| || | ||||||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 41737 GGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGG 41796 || |||||||| |||||||| || ||||||||||| || |||||| | ||||| || || Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 41797 CGTATTTGGTGG 41808 ||||| || || Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 105 bits (116), Expect = 2e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 41447 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTAC 41506 || |||||| | ||||| |||||||||||||||||||| | ||||||| ||| | ||| Sbjct 186 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 127 Query 41507 AACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATG 41566 || || ||||| | | || | || | |||||| | |||| || | ||| ||| Sbjct 126 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 67 Query 41567 GGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTAC 41626 || || |||||||||||||| | || | || ||| | || ||||| |||||| ||| Sbjct 66 GGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATAC 7 Query 41627 TCTGCT 41632 || ||| Sbjct 6 TCAGCT 1 >seq472319 Length=337 Score = 105 bits (116), Expect = 2e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 41896 CAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCG 41955 ||| ||||||||||||||||||| ||| |||||||| |||||||| || |||||||| | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 41956 GCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTT 42006 | ||||||||||||||||| || || || || ||| | | || ||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq71309 Length=1427 Score = 86.0 bits (94), Expect = 2e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 41893 TTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGG 41952 |||||| ||||||||||||||||||||||| |||||||| || || || |||||| Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 41953 TCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTG- 42011 || | |||||||||||||| | || || || || ||| | | || || ||||||| Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTT-TTTCTTGT 796 Query 42012 CTGC 42015 |||| Sbjct 797 CTGC 800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145057714330720