Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq351396 244 3e-60 seq217498 136 1e-27 seq664408 131 5e-26 seq472319 91.5 4e-14 seq71309 84.2 6e-12 >seq351396 Length=451 Score = 244 bits (270), Expect = 3e-60 Identities = 270/357 (76%), Gaps = 2/357 (1%) Strand=Plus/Minus Query 42916 GAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACT 42975 ||||| |||||||| ||| ||| | || ||||| || ||||||||||| |||||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 42976 TATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT 43035 ||||| ||||| || || |||||||| ||||| || | |||||||||||||| | |||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC-TAGTTT 330 Query 43036 -AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTT 43094 || || ||| ||||| |||||||| | || |||||||| || || || || ||||| Sbjct 329 CAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTT 270 Query 43095 CACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATC 43154 |||| || | || | ||||||||||| || ||| | |||||||| || || |||||||| Sbjct 269 CACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 210 Query 43155 ACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAA 43214 | ||||||| ||| || || || ||||||||||||||| | || || || || Sbjct 209 TGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAA 150 Query 43215 CCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 ||||| | || || |||||||| || ||||| || |||||||| || || || || Sbjct 149 TCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 93 >seq217498 Length=656 Score = 136 bits (150), Expect = 1e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || |||||| | ||| ||| | ||||||||||| | || ||||| Sbjct 312 TGGGGTCGCTTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTC 371 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| |||||| |||| ||||| Sbjct 372 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCAT 430 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 ||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||| | || || Sbjct 431 CGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTA 490 Query 42459 TGGCAACAACATCATCTCTGGTGC 42482 ||| ||||| || |||||||||| Sbjct 491 TGGAAACAATATTCTCTCTGGTGC 514 >seq664408 Length=200 Score = 131 bits (144), Expect = 5e-26 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42672 TGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGG 42731 |||||| ||||| || ||||| || || || ||||| || ||| | | || || |||| Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 42732 GCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTT 42791 ||||| || || ||||| |||||| | || || || |||| |||||||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 42792 GGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGG 42851 || |||||||| || || ||||| ||||||||||| ||||| ||| | ||||| || || Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 42852 CGTATTTGGTGG 42863 ||||| || || Sbjct 13 TGTATTCGGCGG 2 >seq472319 Length=337 Score = 91.5 bits (100), Expect = 4e-14 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 42951 CAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACG 43010 ||| || ||||||||||| |||| |||||| ||||| || || |||||||| ||||| | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 43011 GCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTT 43061 | |||||||||||||| | |||| || || ||| ||||| |||||||| Sbjct 277 ATTAATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq71309 Length=1427 Score = 84.2 bits (92), Expect = 6e-12 Identities = 90/118 (76%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 42949 TACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGA 43008 ||||| || ||||||||||| ||||||||||| ||||| | ||||||||| ||| Sbjct 679 TACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTTC 738 Query 43009 CGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTG 43066 || | |||||||||||||| | || || || || ||||| ||||| ||||||| Sbjct 739 CGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTT-TTTCTTG 795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142397328166640