Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq351396 224 3e-54 seq217498 116 1e-21 seq597246 95.1 4e-15 seq472319 86.0 2e-12 >seq351396 Length=451 Score = 224 bits (248), Expect = 3e-54 Identities = 251/333 (75%), Gaps = 2/333 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| |||||||| ||||| | || || ||| Sbjct 93 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 152 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 |||||||| | | ||||||||| ||| || || | | || || ||| ||||| || Sbjct 153 GCTCGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGACTATCAACTACAGA 211 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || |||||||||||||| || ||||| || | ||||| | || || | Sbjct 212 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 271 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| | ||||| || | |||||| ||| || || Sbjct 272 CCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAA 331 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || ||||||| ||||| || || || ||||| ||||||||||| || Sbjct 332 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGT 391 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATT 26208 |||||| ||||| ||||| || || || | ||| Sbjct 392 CTCTTCCTCTTGACCAAATTTGTAACCCTCATT 424 >seq217498 Length=656 Score = 116 bits (128), Expect = 1e-21 Identities = 134/175 (77%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 26678 ATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACA 26737 ||||||||||| || | ||| || || ||||| |||||||| || ||||| |||||||| Sbjct 502 ATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACT 443 Query 26738 GGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAA-GCAGGGTA 26795 || || || ||||||||||| | ||||| ||| | ||| || | | ||| | |||| | Sbjct 442 GGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAGTTGCGGTCAATAAAGTAGGG-A 385 Query 26796 TCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCA 26850 |||| | || ||||||||||| | || |||||||| ||||| || || | ||| Sbjct 384 TCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCAGTGCTAGTTATCCA 330 >seq597246 Length=243 Score = 95.1 bits (104), Expect = 4e-15 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 26462 GCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGT 26521 |||| ||||||||| ||||| || | ||| || | | | || |||||||||| Sbjct 2 GCTGAGTATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCA 61 Query 26522 CTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCG 26581 | || ||| ||||| || | ||||||||| | | ||| || | ||| || || Sbjct 62 CGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCA 121 Query 26582 CCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCG 26641 |||||||||| |||||| || | | |||||||||| || |||||||| || | |||| Sbjct 122 CCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCG 181 Query 26642 ATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAG 26701 || || || | || | | || || || || ||||||||||| || | ||| || Sbjct 182 ATCGCCGCCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAA 241 Query 26702 CC 26703 || Sbjct 242 CC 243 >seq472319 Length=337 Score = 86.0 bits (94), Expect = 2e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 26087 AAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAG 26146 ||||| || | |||||| ||| || ||||| ||||| || || |||||| ||||| Sbjct 227 AAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATTGGCCAAAA 286 Query 26147 TACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTT 26196 || || || ||||| ||||||||||| ||||||| ||||| ||||| || Sbjct 287 TAACCATGAGCAGCCACAATATTATAAATCTCTTCCTCTTGACCAAATTT 336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146543466985600