Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq351396 264 1e-65 seq597246 159 4e-34 seq664408 149 7e-31 seq217498 141 1e-28 seq171123 84.2 3e-11 >seq351396 Length=451 Score = 264 bits (292), Expect = 1e-65 Identities = 277/363 (76%), Gaps = 6/363 (2%) Strand=Plus/Minus Query 155596 GAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACT 155655 ||||||||||| | || ||| || | |||||||| || || ||||| ||||| ||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 155656 TATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTC 155715 ||||| ||||| ||||||||||| || || || || | |||||||| ||||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 155716 AACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCA 155775 |||||||| | | | ||||||||| | ||||| |||||||| || | |||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 155776 ACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 155835 |||||| | ||| | || ||||| |||||||| || |||||||| |||||||| ||| Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 155836 GTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCT 155892 ||||| || |||| ||| || || ||| ||||| || || | ||||| ||| Sbjct 208 GTAGTTGA---TAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCT 152 Query 155893 GGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCT 155952 |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||| Sbjct 151 AATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 92 Query 155953 GCT 155955 ||| Sbjct 91 GCT 89 >seq597246 Length=243 Score = 159 bits (176), Expect = 4e-34 Identities = 183/245 (75%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 155125 GGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCA 155184 ||||||||| | ||||| ||||| || |||||||||||| || | |||| ||| || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 155185 ATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAAT 155244 || || | ||||| || || ||||||||||| ||| || ||||||||||||| |||||| Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 155245 GGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT--- 155301 |||||||||| | || | || | |||||| | | || | ||| | | | Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATG 67 Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361 |||||| ||||||||||| || |||| | || |||||||||||||| |||||||||| Sbjct 66 GGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATAC 7 Query 155362 TCTGC 155366 || || Sbjct 6 TCAGC 2 >seq664408 Length=200 Score = 149 bits (164), Expect = 7e-31 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 155352 TGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGG 155411 |||||||||||| || || || | ||||| ||||| ||| | |||| ||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 155412 TCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTT 155471 |||||| |||||||||| |||||| | || || ||||||| ||| |||| |||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 155472 CGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGG 155531 || ||||| ||||| ||||| ||||||||||| || ||||||||| | || ||||| || Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 155532 TGTGTTCGGTGG 155543 ||| ||||| || Sbjct 13 TGTATTCGGCGG 2 >seq217498 Length=656 Score = 141 bits (156), Expect = 1e-28 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| |||| ||||| | || |||| |||||||||||| | | Sbjct 322 TCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGA 381 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | || || | || ||| |||||||||| ||||| |||| Sbjct 382 TGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTC 441 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| ||||||||||||||||| || || ||||||||||| | ||||| ||||| | Sbjct 442 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATA 501 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTC 155177 | ||||||||||| || | |||| ||| Sbjct 502 TTCTCTCTGGTGCTATTATTCCTACTTC 529 >seq171123 Length=784 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 155805 CAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCAT 155861 |||||| || |||||| | || ||||| |||||||| || | ||| || || || Sbjct 642 CAACCTAAATGGTTTCCATTTTAACCAATCTGTAGTTGATAC-AGTCAAGGCCGCGTTAT 700 Query 155862 CCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCG 155921 ||| || | || || | ||||| ||| | |||||||||||||||||||| | || Sbjct 701 TAATACTTGAGATGATATCATCAACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACG 760 Query 155922 TAACGCTCACAACTTCCCTCTTGA 155945 || ||||||||||||||||| || Sbjct 761 AAATGCTCACAACTTCCCTCTAGA 784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579965131080800