Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq351396 228 2e-55 seq664408 134 4e-27 seq597246 105 2e-18 >seq351396 Length=451 Score = 228 bits (252), Expect = 2e-55 Identities = 270/363 (74%), Gaps = 2/363 (1%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| || Sbjct 89 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 148 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | || ||| | | ||||||||||||| ||| || ||| | | || ||||| Sbjct 149 ATTAGCTCGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTAC 208 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || |||||||| ||||| |||||||||||| ||||| | | || Sbjct 209 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 268 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | ||| || || | || || ||||| ||||| |||||||||| | ||| |||| Sbjct 269 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAG-AAGAAGTGTAAAGAACGAGAGTTGT 327 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 |||| ||||||||| || |||| || ||||| ||||| || ||||| || || |||| Sbjct 328 TGAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTAT 387 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 ||||||| | || |||||||| || || || | || |||||| |||| || || | Sbjct 388 AAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTT 447 Query 40888 CCC 40890 ||| Sbjct 448 CCC 450 >seq664408 Length=200 Score = 134 bits (148), Expect = 4e-27 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 || || || || || || || || | ||| |||||||| ||||| || |||||||| ||| Sbjct 2 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 61 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 || ||||| |||| ||| |||||||| | ||| |||||||||||||||||||||||| Sbjct 62 GCCTGGAATACAATCATAAAGTTGAAAATACCAGATATTCCTAAAGGCATACCATCAGAG 121 Query 41061 AAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCT 41120 || || ||||| | || |||| ||||| ||||| ||| || | | |||||| Sbjct 122 AAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCT 181 Query 41121 GTGTATGCCACA 41132 | |||||| ||| Sbjct 182 GAGTATGCAACA 193 >seq597246 Length=243 Score = 105 bits (116), Expect = 2e-18 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 41117 AGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTG 41176 ||||| |||||| ||| ||||| || | |||||| | | | | ||||||||||| Sbjct 1 AGCTGAGTATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTC 60 Query 41177 TCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCC 41236 | ||| || ||||| || | ||| ||||| | ||||| || | ||| || || Sbjct 61 ACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACC 120 Query 41237 GCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCC 41296 || ||||||| |||||| || | | | |||||||| |||||||| || || | ||| Sbjct 121 ACCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCC 180 Query 41297 GATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGA 41356 ||| || || | |||| | ||| ||||| ||||||||||| || || | ||| || Sbjct 181 GATCGCCGCCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGA 240 Query 41357 GCC 41359 || Sbjct 241 ACC 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142565586480120