Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq351396 262 4e-65 seq664408 152 6e-32 seq597246 131 2e-25 seq59528 100 3e-16 seq71309 98.7 1e-15 seq217498 95.1 1e-14 seq472319 84.2 2e-11 >seq351396 Length=451 Score = 262 bits (290), Expect = 4e-65 Identities = 276/363 (76%), Gaps = 0/363 (0%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 89 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 148 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGAC 67477 |||| ||| | ||| || ||||||||| ||| || ||| ||||| || Sbjct 149 ATTAGCTCGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTAC 208 Query 67478 GGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGT 67537 ||||||||||| |||||||| || |||||||| |||||||| | ||| | ||||| Sbjct 209 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 268 Query 67538 GAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTT 67597 ||||||||| | || ||||| | ||||| | ||||||||| | | | |||||||| Sbjct 269 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 328 Query 67598 GAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTA 67657 |||| ||||| |||||||| || || || || || ||||||||||| ||||| || || Sbjct 329 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATA 388 Query 67658 AGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTC 67717 ||||||||| ||||| || || |||||||| | || || || | ||||||||||| Sbjct 389 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTC 448 Query 67718 TCT 67720 || Sbjct 449 CCT 451 >seq664408 Length=200 Score = 152 bits (168), Expect = 6e-32 Identities = 149/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || ||||||||||| ||||| || | ||| |||||||| ||||||||||||||||||||| Sbjct 2 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 61 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889 || ||||| || | ||| |||| ||| ||||||| || || | |||||| | |||||| Sbjct 62 GCCTGGAATACAATCATAAAGTTGAAAATACCAGATATTCCTAAAGGCATACCATCAGAG 121 Query 67890 AAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCA 67949 || |||||||| | ||| || | |||||| ||||| || || | || ||||| Sbjct 122 AAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCT 181 Query 67950 GAGTATGCTACA 67961 |||||||| ||| Sbjct 182 GAGTATGCAACA 193 >seq597246 Length=243 Score = 131 bits (144), Expect = 2e-25 Identities = 170/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005 ||| |||||||| ||| ||||||||||||||||| | |||| || ||||||||||| Sbjct 1 AGCTGAGTATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTC 60 Query 68006 ACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGG 68062 |||||| | | | ||| | || | | |||||| | || | || | |||| Sbjct 61 ACGACCCATATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGG 117 Query 68063 TCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122 |||||||| || ||||||||||| | || ||| |||||||| || || || ||||| | Sbjct 118 ACCACCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAA 177 Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTA 68176 ||||| || ||| |||||| || ||||||||| || || ||||| || || Sbjct 178 TCCGATCGCCGCCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATA 231 >seq59528 Length=1577 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 67642 CAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACT 67701 |||| ||||| || ||||||||||| ||||| || || |||||||| | || || | Sbjct 562 CAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATT 503 Query 67702 CTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAA 67761 | | ||| || |||| ||||| | | ||| || || | ||||| ||||||||||||| Sbjct 502 CATTTTCAATAATTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTAA 443 Query 67762 AGAGTGAACCACCGAATACACCTGC 67786 | || || || ||||||||||| || Sbjct 442 ATAGGGAGCCGCCGAATACACCAGC 418 >seq71309 Length=1427 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/229 (70%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 67562 TGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAA 67621 ||||| | ||| ||||| | | | ||||||||||||| ||||||| |||||||| || Sbjct 801 TGCAGACAAGAAAAAGTGGAAAGAACGTGAGTTGTTGAAACATGCATATTGGAAGATTAA 742 Query 67622 GCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTT 67681 || || || ||||| || ||||| || ||||||||||| ||||| || || || Sbjct 741 TCGGAAAAAATAACCATGCACAAACACAATATTATAAGTCTCTTCCTCTTGACCAAAATT 682 Query 67682 GTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAG-TAACAA 67740 |||| | | || || || | ||| | ||||| |||| | | || | || ||| Sbjct 681 GTAAACCTCATT---AGATTCATTTTCAATTGTTTCCTTGATCAAACTCGAGGTTACCAA 625 Query 67741 GA------GAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACC 67783 || ||||| || ||||||||||| || ||| |||||||||| Sbjct 624 GAAGCAAGGAACCATGTATAGCACTAAATAGGGAATTGTCGAATACACC 576 >seq217498 Length=656 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 68136 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACA 68195 ||| |||||| || ||||||||| | || ||||| || || | | ||||| | |||| Sbjct 529 GAAGTAGGAATAATAGCACCAGAGAGAATATTGTTTCCATAAAGTAAAGAACCAGAAACA 470 Query 68196 GGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAA 68255 || || | |||||||| ||||| |||||||| || || ||||| || || || || | Sbjct 469 GGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA 410 Query 68256 GTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 | | ||| | | || ||| |||||||| ||||||||||| || Sbjct 409 GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCGAACCATCC 363 >seq472319 Length=337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 67572 AAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAG 67631 |||||||| | | | |||||||||||| ||||| |||||||| || | || || Sbjct 227 AAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATTGGCCAAAA 286 Query 67632 TATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTG 67682 || ||||||||||| ||||| || ||| ||||||| ||||| || || ||| Sbjct 287 TAACCATGAGCAGCCACAATATTATAAATCTCTTCCTCTTGACCAAATTTG 337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562226088928800