Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq351396 289 3e-73 seq162061 230 3e-55 seq597246 158 1e-33 seq217498 156 5e-33 seq664408 149 7e-31 seq63256 111 2e-19 seq623740 109 6e-19 seq466979 109 6e-19 seq178439 95.1 1e-14 seq59528 95.1 1e-14 seq632425 91.5 2e-13 seq71309 91.5 2e-13 seq472319 87.8 2e-12 >seq351396 Length=451 Score = 289 bits (320), Expect = 3e-73 Identities = 280/360 (78%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 |||||| ||||| |||||||||||||| || ||||| || ||||| ||||||||||| | Sbjct 89 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 148 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958 | ||| ||||||| | || ||||| ||| | ||| ||| |||||||| | Sbjct 149 ATTAGCTCGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTAC 208 Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018 ||| |||||||| ||||||||||| |||||||| ||||| || |||| ||| | ||||| Sbjct 209 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 268 Query 68019 GAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTT 68078 ||||||||| || || |||||||| ||||| | ||||||||| | ||||| |||||||| Sbjct 269 GAACCAGATTCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 328 Query 68079 GAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTA 68138 ||| ||||| |||||||| | || || || || ||||| ||||| ||||| || || Sbjct 329 GAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATA 388 Query 68139 AGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||||||||| |||||||| || |||||||| | || || ||| ||||||| ||||| Sbjct 389 AGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTC 448 >seq162061 Length=815 Score = 230 bits (254), Expect = 3e-55 Identities = 254/336 (76%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 66966 TCACCATCTTCATACAGAGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCA 67025 ||||| || ||| | ||||| || ||||| || | |||||||| || | |||| || Sbjct 550 TCACCGTCCTCAAATAGAGTGTTTTCTACGGTCGCTCCATGAATAGCGCATAGCAGAGCC 491 Query 67026 CCACCCAGGATACCTGCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAAT 67085 | || | | || || || |||||||||||||| |||||||| ||||| ||||| ||| Sbjct 490 GCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAAT 431 Query 67086 CCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAAC 67145 ||||| | ||| || | ||||||||| ||||||| || || ||| || || || ||| Sbjct 430 CCTTGGAAGAAAAGGATGAATCGAAATATTGCTGCTACGCCAAAACTCGGCGCAAAGAAC 371 Query 67146 CAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAACAAAAACAGCGATAGGACCA 67205 |||| ||||| ||||| || || || || || ||| ||||||||| ||||| |||||| Sbjct 370 CAACCAGATTGCCCCAGTGGATAAATAAGGAATACAGAAACAAAAACCGCGATTGGACCA 311 Query 67206 GAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA-CGTGCCAGTTCAAACTGGCG 67264 ||||| | || ||||| || || || | | || ||| || || |||||||| ||||| Sbjct 310 GAGAATGAGATTGCATTATAAGGCCGCA-ATTGAACAGACCGAGCAAGTTCAAATTGGCG 252 Query 67265 AAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAG 67300 | ||||||||| ||||| || |||||||||||||| Sbjct 251 TAACATGAAACCTATTAGTGCAAAAGCCCCGTGGAG 216 >seq597246 Length=243 Score = 158 bits (174), Expect = 1e-33 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 68428 GCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCA 68487 || |||||||||||| ||||||||||||||||| | ||| | ||||||||| ||| Sbjct 2 GCTGAGTATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCA 61 Query 68488 CGTCCCATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCA 68547 || ||||| || | | ||||| | |||||| | | | || | |||||||| Sbjct 62 CGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCA 121 Query 68548 CCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCA 68607 |||||||| ||||||||||||| | ||| ||||||||||| || |||||||| | || Sbjct 122 CCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCG 181 Query 68608 ATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAA 68667 || || ||| |||||| || ||||||||| || || ||||| ||||| || | ||| Sbjct 182 ATCGCCGCCGAAGTAGGAATAATAGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAA 241 Query 68668 CC 68669 || Sbjct 242 CC 243 >seq217498 Length=656 Score = 156 bits (172), Expect = 5e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 68617 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACA 68676 ||| |||||| || ||||||||| | || ||||| ||||| || | ||||||| |||| Sbjct 529 GAAGTAGGAATAATAGCACCAGAGAGAATATTGTTTCCATAAAGTAAAGAACCAGAAACA 470 Query 68677 GGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACA 68735 || |||||||||||||| || || || || || |||||||||||||||| || || ||| Sbjct 469 GGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA 410 Query 68736 GATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCG 68795 || ||||| | | | ||||||||||||| || |||||||| || | |||||| || Sbjct 409 GA-AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACG 351 Query 68796 GTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 ||| || ||| ||| | ||| | |||||| Sbjct 350 GTTTTCAGTGCTAGTTATCCAGTTGCAGAA 321 >seq664408 Length=200 Score = 149 bits (164), Expect = 7e-31 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 68251 CCACCAAATACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCT 68310 || || ||||| ||||| || || | ||| ||||| || ||||| ||||||||||||||| Sbjct 2 CCGCCGAATACACCAGCTACACCTAACATGTGGAATGGATGCATAAGGATGTTGTGCTCT 61 Query 68311 GCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAG 68370 || ||||| || | ||| |||||||| ||||||| || || | |||||| | |||||| Sbjct 62 GCCTGGAATACAATCATAAAGTTGAAAATACCAGATATTCCTAAAGGCATACCATCAGAG 121 Query 68371 AACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCA 68430 || |||||||| | ||| || | || ||| || || | || || |||||||| || Sbjct 122 AAGCTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCCGCAACAGGAGCT 181 Query 68431 GAGTATGCAACA 68442 |||||||||||| Sbjct 182 GAGTATGCAACA 193 >seq63256 Length=1526 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 67184 AACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAG 67243 ||||||||| ||||| ||| ||||||| | || ||||| || || || | | || || Sbjct 212 AACAAAAACCGCGATTGGATCAGAGAATGAGATTGCATTATAAGGCCGCA-ATTGAACAG 154 Query 67244 AC-GTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCG 67302 || | || |||||||| ||||| | ||||||||| ||||| || |||||||||||||| | Sbjct 153 ACCGAGCAAGTTCAAATTGGCGTAACATGAAACCTATTAGTGCAAAAGCCCCGTGGAGAG 94 Query 67303 CCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAG 67362 | ||||| |||| | || || | || |||||| ||||| || || | || | Sbjct 93 CTACAAACGTCCATAAACCGCCTAACTGACACCAGCGAGTAAAATCTCCTTGTGCTTCCG 34 Query 67363 GACCCCAAAGTAG 67375 | ||||| ||||| Sbjct 33 GCCCCCATAGTAG 21 >seq623740 Length=225 Score = 109 bits (120), Expect = 6e-19 Identities = 139/189 (74%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 67044 ACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGG 67103 || |||||||||||||| |||||||| ||||| ||||| |||||||| | ||| || | | Sbjct 2 ACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAAAGGATG 61 Query 67104 AATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTG-----AC 67158 |||||||| ||||||| || || ||| || || || ||||||| || | | Sbjct 62 AATCGAAATATTGCTGCTACGCCAAAACTCGGCGCAAAGAACCAACCGAATCGCCCCACC 121 Query 67159 CCAGAGGGTAGATGAGAAAGACACTAAC--AAAAACAGCGATAGGACCAGAGAACGCAAT 67216 |||| || || || || || ||| ||| |||||| ||||| ||| |||||| | || Sbjct 122 CCAGTGGATAAATAAGGAATACAGAAACAAAAAAACCGCGAT-TGACTAGAGAATGAGAT 180 Query 67217 AGCATTGTA 67225 ||||| || Sbjct 181 GGCATTATA 189 >seq466979 Length=342 Score = 109 bits (120), Expect = 6e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 66827 AAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAGA 66886 ||| | |||||||||||| ||||| | |||||| ||| |||| ||||||||| || || Sbjct 118 AAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGA 177 Query 66887 CCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGT 66934 ||| |||| ||| ||||| |||||||| ||||||||||| ||||||| Sbjct 178 CCAAAAGCAGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGT 225 >seq178439 Length=759 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 66609 AGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTTGATCGATAGGTGCCAACCATGCA 66668 ||||| || || ||||||| || |||||||| ||| || ||||| ||| || Sbjct 758 AGAACCTCCTCAGGGAATATAAGATTTTCATG------ATCCTAAGCTGCCATCCACCCA 705 Query 66669 CGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGAACGTCTCGAACTCTGGGTCTTCT 66728 |||| ||| ||||| || ||||| || || |||||||| ||||| || || | ||||| Sbjct 704 CGAATACCCTCATTTAAAAGAATATTTTTGGTGTAGAAAGTCTCAAATTCACGATCTTCC 645 Query 66729 GCTGCTCTGATCTCTTGGGATACAAAGTCATA 66760 | ||| | ||| || | ||| ||||||||||| Sbjct 644 GTTGCACGGATTTCCTAGGAAACAAAGTCATA 613 >seq59528 Length=1577 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 68123 CAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACT 68182 |||| ||||| || ||||||||||| |||||||| || |||||||| | || || | Sbjct 562 CAGCCACAATATTATAAGTCTCTTCCTCTTGACCAAATTTGTAACCCTCATTAGCAGATT 503 Query 68183 CAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGA 68242 || ||||| | |||| | | || ||| || |||| |||||||||||| ||||| | Sbjct 502 CATTTTCAATAATTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTAA 443 Query 68243 ACAGAGATCCACCAAATACGCCAGC 68267 | || || || || ||||| ||||| Sbjct 442 ATAGGGAGCCGCCGAATACACCAGC 418 >seq632425 Length=219 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| ||| ||||||| ||| || Sbjct 207 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCGGTTAACAGCCGACCGC 150 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 149 TCTACCACTGAGCTACTGAGGA 128 >seq71309 Length=1427 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/156 (73%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 68043 TGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGAAGATCAG 68102 ||||| | ||| ||||| | ||||| ||||||||||| ||||||| |||||||| | Sbjct 801 TGCAGACAAGAAAAAGTGGAAAGAACGTGAGTTGTTGAAACATGCATATTGGAAGATTAA 742 Query 68103 ACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTT 68162 || || || ||||| || ||||| || ||||||||||| |||||||| || || Sbjct 741 TCGGAAAAAATAACCATGCACAAACACAATATTATAAGTCTCTTCCTCTTGACCAAAATT 682 Query 68163 GTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 |||| | | || || ||| ||||| | ||||| Sbjct 681 GTAAACCTCATT---AGATTCATTTTCAATTGTTTC 649 >seq472319 Length=337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 68053 AAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAG 68112 |||||||| | ||||| ||||||||||| ||||| |||||||| | | || || Sbjct 227 AAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATTGGCCAAAA 286 Query 68113 TATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTG 68163 || ||||| ||||| ||||| || ||| ||||||| |||||||| || ||| Sbjct 287 TAACCATGAGCAGCCACAATATTATAAATCTCTTCCTCTTGACCAAATTTG 337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567290759997600