Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq307656 114 2e-20 >seq307656 Length=504 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || ||||||| || || | || | |||| |||||| |||||| Sbjct 307 ATTTGCATACCTCCCCTCAATCTGAGCACTAAGTGAAGGGTAGACTCTTTTTGGATATTA 248 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||| || || | | || |||| |||||| || || ||||| | | || || Sbjct 247 TAGTCGCTTAGAGTGCGACCGTCTTCTAGTTGTTTACCAGCGAAAATGAGACGTTGCTGG 188 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || ||||| |||||||| || || ||||| | || | ||| |||||| || ||| Sbjct 187 TCTGGTGGTATGCCTTCTTTGTCCTGAATTTTTGACTTGACATTATCAATAGTGTCCGAA 128 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| ||||| || || || ||||| || ||||| || || || || || ||||| Sbjct 127 GCCTCCACTTCGAGTGTAATGGTTTTGCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| ||||||||||| ||||| ||||| | | ||| || || || || |||||||| || Sbjct 455 ATCCTCTAATTGTTTGCCGGCGAAAATGAGACGCTGCTGGTCTGGCGGAATTCCTTCCTT 396 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || || | ||| | ||| ||| || || || | ||| || || || || || Sbjct 395 GTCCTGGATCTTCGATTTCACATTGTCAATGGTGTCAGACGCCTCTACCTCAAGGGTAAT 336 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| || | || || ||||| |||||||| Sbjct 335 AGTTTTACCCGTCAAAGTCTTGACAAAGATTTGCAT 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 892162752897600