Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq307656 107 4e-18 >seq307656 Length=504 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 ||||| || | |||| |||||| ||||||||| || || || || | || || Sbjct 280 ACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGCTTAGAGTGCGACCGTCTTCT 221 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | |||||||||||| || || | | || || || |||||||| |||||||| || || Sbjct 220 AGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTGGTATGCCTTCTTTGTCCTGA 161 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| || |||||| |||| || || | || ||||| || ||||||||||| Sbjct 160 ATTTTTGACTTGACATTATCAATAGTGTCCGAAGCCTCCACTTCGAGTGTAATGGTTTTG 101 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| || || | || |||||||| Sbjct 100 CCAGTTAGAGTCTTGACGAAAATCTGCAT 72 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 976077038643000