Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq214076 105 2e-18 >seq214076 Length=664 Score = 105 bits (116), Expect = 2e-18 Identities = 136/188 (72%), Gaps = 10/188 (5%) Strand=Plus/Minus Query 14851 GGCTTCATCAACGGCATCAAGGACATGTTCGGCTCGGTGAAGTCGACCCTCGGTGACCTC 14910 ||| ||||||||||||||||| ||||||||| ||||| ||||||||||| || | || Sbjct 610 GGCCTCATCAACGGCATCAAGTCCATGTTCGGATCGGTCAAGTCGACCCTGGGCGGGCTG 551 Query 14911 ACCAGCAAGCTGACCTCCTGGAAGGGTCCGGAGTCCCT-----GGACCGCGTCCTCCTGG 14965 ||| |||||| | ||||||||||| || |||| |||| | ||||| Sbjct 550 ACCTCGAAGCTGTCGTCCTGGAAGGGCCC-----CCCTGGGAAGGACGCCACGATCCTGA 496 Query 14966 TCAACGCTGGTCAGCTCGTCATCGGCGGCTTCATCAAGGGTCTGGAGTCGCGCTACGGCG 15025 || | || ||||| || ||| ||| |||||| ||| || ||||| |||||| | Sbjct 495 AGGACTCCGGCCAGCTGGTGATCAACGGATTCATCGCGGGCCTTGAGTCCCGCTACCCGG 436 Query 15026 CGGTCAAG 15033 |||||||| Sbjct 435 CGGTCAAG 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163540731332240