Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq180 138 3e-27 seq3224 102 2e-16 seq30271 98.7 3e-15 seq37927 95.1 4e-14 seq6674 95.1 4e-14 seq4181 89.7 2e-12 seq82837 86.0 2e-11 seq124623 84.2 6e-11 >seq180 Length=8865 Score = 138 bits (152), Expect = 3e-27 Identities = 217/307 (71%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 || |||||| ||||| | ||||||||||||||| |||||| |||||| || || || Sbjct 5131 TCCTCCATAGCCTTGACAAGACGACGCTGAATATATCCAGTTTCAGATGTCTTAACTGCA 5072 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 || ||||| ||||| | | ||||||||||||||| ||||| | || | ||| ||| Sbjct 5071 GTGTCAATGAGACCTTCTCTACCACCCATAGCATGAAAGAAGAATTCCTGGGGTGTTAGA 5012 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || |||| | || |||| || |||||||| || || || || | ||| || Sbjct 5011 CCAAGAATATATGAATTCTCCACAAAACCACGGCTTTCAGGTCCATAATC-ATCTT-TTA 4954 Query 302752 --AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 ||||| ||||| || | || |||| |||| || ||||| || ||||| |||| Sbjct 4953 GGAAGTGAGGCAGTGTTCGATTAGTGAAGCCAAATGGAATGCGCTTGCCCTCAACATTCT 4894 Query 302810 GCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCAT 302869 ||||||| | || | | |||| || | |||||| | ||| ||||| ||||||||| Sbjct 4893 GCTGTCCAACACAAGCAGTCATTTGTGCAATATTAATGAAACTTCCCTTAGAGCCAGCAG 4834 Query 302870 TTACCAT 302876 ||||| Sbjct 4833 CGACCAT 4827 >seq3224 Length=4829 Score = 102 bits (112), Expect = 2e-16 Identities = 209/304 (69%), Gaps = 14/304 (5%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || || || ||||| | ||||||||| || ||||||||||| |||| ||| Sbjct 1814 GGCAATGAGTCCGCACTTCTCACACACATGTACTCTGTAAGCATCGCTCTGGTCAAATAA 1873 Query 251463 CCGACCCTTGGTGAAGCGAGATGCA---CCGTGTGAAATCATACAATCACGCTCCATTTC 251519 ||| ||| | ||| | ||||| || || | |||||||||||| | ||||||||| Sbjct 1874 CCGTTCCT---TCAAGAAAAATGCAGCGCCATGAGCAATCATACAATCCCTCTCCATTTC 1930 Query 251520 ACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAAC 251579 || ||||| ||||||||||| || | | ||||| || ||||| | || | | Sbjct 1931 TCCAAAACGGAGACCACCATCACGGGAGCGCCCCTCTGCTGGCTGCCTGGTCAATATCTG 1990 Query 251580 CATAGGACCGATGGAGCGGCTA---TGTTGCTTATCATTTACCATATGCTTGAGACGCTG 251636 | |||||| | | || ||| || || |||| ||||| ||||| || | ||| Sbjct 1991 GACAGGACC-ACG--GCCTCTAGAGTGAATTTTGTCATCCACCATGTGCTTAAGTCTCTG 2047 Query 251637 GTAGAATGCGGGACCGATGAAGATGCTCGAAGGC-ATTTGCTCTCCAGTTAGAGCGTTAT 251695 |||| | | ||||| | |||||| | | || | |||| ||| ||||| || | || | Sbjct 2048 GTAGTAAGTTGGACCTAGGAAGATCATTGCAGTCAATTTTCTC-CCAGTGTGACCATTGT 2106 Query 251696 ACAT 251699 |||| Sbjct 2107 ACAT 2110 >seq30271 Length=2204 Score = 98.7 bits (108), Expect = 3e-15 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 156054 TTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATA 156110 || |||||||| ||| ||||||||||| |||||||| | |||||| |||| || |||| Sbjct 1 TTTCTCTTGCCTCCACCTTGATCTACATAACGAGCAGTGTCATTGAAAACACGTAACATA 60 Query 156111 GGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 |||| ||| |||||||| || || || ||||| ||||||| Sbjct 61 GGAACAATCCCATTGGATGTCCCGTTAGTTCCTCGAATAT 100 >seq37927 Length=1985 Score = 95.1 bits (104), Expect = 4e-14 Identities = 83/103 (81%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| || |||||||| ||| ||||| ||||| || ||||| | |||||| |||| || Sbjct 1594 TACCTTTTCTCTTGCCTCCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGTA 1535 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAAT 156148 |||| || | ||| ||||||||||| ||||| ||||| ||||| Sbjct 1534 GCATGGGGACAATTCCATTGGAAGTTCCATTTGTTCCTCGAAT 1492 >seq6674 Length=3929 Score = 95.1 bits (104), Expect = 4e-14 Identities = 218/320 (68%), Gaps = 10/320 (3%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||||||||| ||||| || | | || || | | || || || |||| Sbjct 1098 ACCAATTGCATCAATTTCATCAATAAATACAATACTAGGTGCACATTCCCTAGC--TTGC 1041 Query 289089 --AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 |||||| | ||| || | ||||| ||||| ||||||| ||||||| | || || ||| Sbjct 1040 TGAAATAAGTTTCTCACCCTGGATGGTCCAACACCAACAAACATTTCCAGGAAGTCTGAA 981 Query 289147 GCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | || | |||| | ||| | ||| | || || || || | || || ||||| Sbjct 980 CCAGA-AATTGACAAGAAGGGTACGCCAGACTCTCCAGCAGTAGCTTTAGCAAGGAGTGT 922 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAG 289264 ||| ||||| ||||| || || | ||| | ||||| |||| ||| || |||| | Sbjct 921 CTTTCCTGTGCCAGGGGGGCCACAAAGAAGAGCACCCTTCGGTATTTTAGCTCCCA--AT 864 Query 289265 ACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 ||| ||| |||| || | || | || | |||| |||| || ||| | ||| || Sbjct 863 TCTTCATACTTCTTCGGATTTTTCAGGAAATGAACAAATTCCATAATTTCTTGTTTGGCT 804 Query 289324 TCATCACATCCTGCTACATC 289343 |||||||| || |||||||| Sbjct 803 TCATCACAGCCAGCTACATC 784 >seq4181 Length=4513 Score = 89.7 bits (98), Expect = 2e-12 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 302641 AGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATA 302700 ||||| | | ||||||||||||||||||||| | || | ||| ||| || | || Sbjct 4513 AGACCTTCTCTACCACCCATAGCATGGAAGAAAAATTCCTGTGGTGTTAGACCTCGAAGG 4454 Query 302701 AAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGC 302760 | ||| |||| || || ||||| || || || ||| || || ||||| ||| Sbjct 4453 TAAGAGTTCTCCACAAATCCACGGCTTTCAGGACCATAGTCATCTTTTGTGAAGTGGGGC 4394 Query 302761 AGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGG 302820 | || | | || | || ||||||| ||||| || ||||| ||||| ||||| | Sbjct 4393 AATGTACGATCAACAAAACCAAATGGGATCCGCTTGCCCTCAACATTCTGTTGTCCGACA 4334 Query 302821 CACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 || | | |||| || |||||||| | ||| || || ||||| ||| | |||||| Sbjct 4333 CAAGCAGTCATTTGTGAAATATTAATGAAACTTCCTTTCGAGCCTGCAGTGACCATA 4277 >seq82837 Length=1307 Score = 86.0 bits (94), Expect = 2e-11 Identities = 156/225 (69%), Gaps = 10/225 (4%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 |||||||||||||| ||| ||||| ||||| | | || | | || | | || || | Sbjct 220 ACCAACAGCATCAAGTTCATCAATAAAAATGATTGATGGTGCAGCTTCTTTTGC--TTCC 163 Query 289089 --AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 || || ||||| ||||| | |||||| |||||| ||||||| ||||||||| | Sbjct 162 TTGAACAAATCTCTGACACGTGCTGCTCCTCTTCCAACAAACATTTCAACAAATTCACTA 103 Query 289147 GCGGATACTTGAATGAATG---TTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 || || || | ||||| || || || || ||||| |||||| | ||||| || Sbjct 102 GCAGAAACAGAGAAGAATGGAATTCCA---GCCTCTCCTGCAACTGCCTTGGCCAGCAGA 46 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGT 289248 || || || ||||| || || || | | ||||| ||| | ||| Sbjct 45 GTTTTCCCAGTTCCTGGAGGACCAGCAAGCAGAACGCCCCTAGGT 1 >seq124623 Length=992 Score = 84.2 bits (92), Expect = 6e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| | ||| ||||| |||||| ||| | | || || Sbjct 126 ATTTCTCACTGTACCATCATACTTGACCATGATGTCCTCCATAGCCTTCACAAGCCGCCG 67 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||||||| |||||| ||| ||||| || || |||||||| ||||| | | |||||| Sbjct 66 CTGAATATAGCCAGTTTCAGAAGTTTTCACGGCGGTATCAATAAGACCTTCTCTACCACC 7 Query 302658 CATAGC 302663 |||||| Sbjct 6 CATAGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1459255002062660