Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq214076 109 2e-19 >seq214076 Length=664 Score = 109 bits (120), Expect = 2e-19 Identities = 162/230 (70%), Gaps = 10/230 (4%) Strand=Plus/Minus Query 14516 GCGCTGGGCAACCTGGGTTCGACCCTGATCAGTGCGGGCAAGAAGCTCATCCAGGGCTTC 14575 || |||||||||||||| | ||| | ||||| || ||| | |||| ||| || Sbjct 664 GCCCTGGGCAACCTGGGCGGGCTGCTGCTGAGTGCCGGTAAGGCCGTGATCCGTGGCCTC 605 Query 14576 ATCAACGGCATCAAGGACATGTTCGGTTCGGTGAAGGACACCCTCGGTGGCCTGACCGAC 14635 ||||||||||||||| ||||||||| ||||| ||| ||||| || || |||||| Sbjct 604 ATCAACGGCATCAAGTCCATGTTCGGATCGGTCAAGTCGACCCTGGGCGGGCTGACCTCG 545 Query 14636 AAGCTCACGTCCTGGAAGGGTCCGGAGTCCCT-----GGACCGCGTCCTCCTCGTGGACG 14690 ||||| ||||||||||||| || |||| |||| | |||| |||| Sbjct 544 AAGCTGTCGTCCTGGAAGGGCCC-----CCCTGGGAAGGACGCCACGATCCTGAAGGACT 490 Query 14691 CCGGTCGCCTCGTGATCGGTGGCTTCATCAAGGGTCTGGAGTCTCGCTAC 14740 |||| | || |||||| || |||||| ||| || ||||| |||||| Sbjct 489 CCGGCCAGCTGGTGATCAACGGATTCATCGCGGGCCTTGAGTCCCGCTAC 440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162032755881240