Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq351396 280 2e-70 seq162061 208 8e-49 seq664408 158 1e-33 seq41969 138 1e-27 seq597246 129 6e-25 seq623740 100 3e-16 seq472319 96.9 4e-15 seq466979 95.1 1e-14 seq71309 89.7 6e-13 >seq351396 Length=451 Score = 280 bits (310), Expect = 2e-70 Identities = 278/360 (77%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 158207 GAAACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACC 158266 ||||| ||||||| || || || | |||||||| || ||||||||||||||||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 158267 TATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 158326 ||||| || || || || ||||| || || || || || ||||||||||| ||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 158327 AACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTC 158386 |||||||| ||||| || ||||||||| | ||||| |||||||| || || ||||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 158387 ACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCC 158446 || || | || | || ||||| |||||||| || |||||||| |||||||| || Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 158447 ATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGT 158506 | ||||| |||| ||||| || | || || ||||| ||| | | ||||| ||| | Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 158507 CTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 158566 |||||||||||||| ||||| || ||||| || ||||||||||| || ||||| |||||| Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 208 bits (230), Expect = 8e-49 Identities = 257/349 (74%), Gaps = 2/349 (1%) Strand=Plus/Plus Query 159597 CTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCT 159655 |||||||| || || || ||||| ||||||||| | || || |||||||| || || ||| Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 159656 CATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAG 159715 | | | || ||||| ||||| || | ||||||||||| || || |||||||| Sbjct 276 GTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTC 334 Query 159716 CGTCTTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGT 159775 || ||||| || || ||| |||| || || ||||||| || || ||| ||||| || Sbjct 335 TGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 394 Query 159776 GGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCC 159835 |||||||| ||| ||||| | | ||| | ||||||||||| || |||||||| || || Sbjct 395 AGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 159836 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGG 159895 || ||||||||||||||||| || || |||| | || || || | || || ||||| Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 159896 CGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACC 159944 | || ||||| ||||| || | ||| || || || ||||||||| Sbjct 515 AGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACC 563 >seq664408 Length=200 Score = 158 bits (174), Expect = 1e-33 Identities = 150/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 157963 TGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGG 158022 ||| ||||| || ||||| || || || || ||||||| ||| | | || ||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 158023 TCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCT 158082 |||||| ||||| |||| ||||||| | || || ||||||| ||| |||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 158083 TGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGG 158142 ||||||||| ||||| ||||||||||||||||| || ||||| ||| | ||||| ||||| Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 158143 GGTATTCGGTGG 158154 |||||||| || Sbjct 13 TGTATTCGGCGG 2 >seq41969 Length=1890 Score = 138 bits (152), Expect = 1e-27 Identities = 159/213 (75%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 160099 CTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGA 160158 |||||||| | | ||||| ||||| || | ||||| || ||||| || || || | Sbjct 566 CTATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGA-A 508 Query 160159 TCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACG 160218 || | ||||| ||||||| ||||||||||| |||||||||||||| || || || |||| Sbjct 507 TCCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACG 448 Query 160219 AAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAG 160278 | || | ||||| ||| ||||| || ||||| || |||||||| |||| ||||| | Sbjct 447 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 388 Query 160279 AAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 | || || | || | || ||||| ||||||| Sbjct 387 AGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 355 >seq597246 Length=243 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 157748 TATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCAC 157807 ||||| ||||| || ||||||||||| || | || |||| || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 157808 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 157867 || || || || |||||||| ||||| ||||||||||| | || || |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 157868 CAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAA 157927 | || | || | |||||| | ||||| | | || ||||| |||||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 157928 CTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCT 157978 ||| | |||||| |||||||| || ||||| ||| ||||| || ||| Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGCT 1 >seq623740 Length=225 Score = 100 bits (110), Expect = 3e-16 Identities = 138/191 (72%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 159671 TTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT--GTCAGCGTCTTCCTCATC 159728 ||| ||||| || | |||||| ||| || || |||||| || || ||||| || Sbjct 190 TTATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATT 132 Query 159729 TACCCATTGGGTCAG-----TCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 159783 || ||| |||| | | | ||||||| || || ||| ||||| || ||||||| Sbjct 131 TATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAA 72 Query 159784 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATA 159843 | ||| ||||| | | ||| | ||||||||||| || |||||||| || || || |||| Sbjct 71 TATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATA 12 Query 159844 TGATGGGAGTT 159854 ||||||||||| Sbjct 11 TGATGGGAGTT 1 >seq472319 Length=337 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 158242 CAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCG 158301 ||| || |||||||||||||||| ||||| || || || || ||||| || || || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 158302 TTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTT 158352 || ||||||||||| ||| ||||||||||| ||||| || |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq466979 Length=342 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 159961 CAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 160020 ||||||||| || || ||||| || ||||||||||| ||| |||| ||||| || |||| Sbjct 227 CAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCT 168 Query 160021 TCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTT 160070 | ||| |||| ||||| || || || ||| | |||||||| ||| | ||| Sbjct 167 TTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq71309 Length=1427 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 158239 TTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGG 158298 |||||| || ||||||||||||||||| ||||| || || | ||||| || || Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 158299 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 158358 || || ||||||||||| || | ||||||||||| ||||| || ||||| ||| | | Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTCTTGTC 797 Query 158359 TGCA 158362 |||| Sbjct 798 TGCA 801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543807949277600