Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq351396 257 2e-63 seq162061 221 1e-52 seq597246 172 6e-38 seq664408 150 2e-31 seq41969 141 1e-28 seq217498 123 3e-23 seq63256 120 3e-22 seq466979 109 6e-19 seq623740 98.7 1e-15 seq634786 95.1 1e-14 seq178439 86.0 7e-12 >seq351396 Length=451 Score = 257 bits (284), Expect = 2e-63 Identities = 255/330 (77%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 151496 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTT 151555 |||||||| || |||||||| |||||||| || || || || || || || ||||| ||| Sbjct 418 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 359 Query 151556 GGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTC 151615 || || | ||||||||||| ||| |||||||| || ||||| | ||||||||| | Sbjct 358 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 299 Query 151616 GCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTC 151675 || || |||||||| || || |||||||||||||| | ||| | || || ||||| ||| Sbjct 298 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 239 Query 151676 AACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAAC 151735 ||||| || |||||||| |||||||| || | | ||| |||| || || | || Sbjct 238 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 179 Query 151736 ACCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 151795 || ||||| || | | ||||| || ||| ||||||||||| |||||||| |||||| Sbjct 178 ACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 119 Query 151796 GCTCACAACTTCCCTCTCGACCTTGCTGCT 151825 ||||||||||||||||| ||||| |||||| Sbjct 118 GCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 221 bits (244), Expect = 1e-52 Identities = 252/336 (75%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 152662 CTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCT 152720 |||||||||||||| || ||||| ||||||||| | ||||| |||||||| || || ||| Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 152721 CATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAG 152780 || | | || || || ||||| || | ||||||||||| ||||| ||||||||| Sbjct 276 GTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTC 334 Query 152781 CGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGT 152840 || || || || || || ||||| ||||| ||||||| || || || ||| || || Sbjct 335 TGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 394 Query 152841 CGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCC 152900 |||||||| || |||||| | || ||| | |||||||| || || ||||| ||||| || Sbjct 395 AGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 152901 GTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGG 152960 |||||||||||||| ||||| || | || || | ||| |||| | || |||||||| Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 152961 TGTTACAGTAGAGAATACTTTGTATCAAGATGGTGA 152996 | || ||||| || ||| | | | | || ||||| Sbjct 515 AGCGACCGTAGAAAACACTCTATTTGAGGACGGTGA 550 >seq597246 Length=243 Score = 172 bits (190), Expect = 6e-38 Identities = 186/244 (76%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 150995 GGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCT 151054 |||||| | | || || ||||| || |||||||||||| || ||||| |||| || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 151055 ATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAAC 151114 ||||| ||||||| || || || |||||||| || ||| | ||||| ||| | ||||| Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 151115 GGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGT 151174 |||||||||| | || |||| | |||||| | ||||| | | ||| |||||| Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 64 Query 151175 CGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTC 151233 |||||||||||||| || ||| |||||||||||||| ||||| ||| ||||||||||| Sbjct 63 CGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGAT-TGCTGTTGCATACTC 5 Query 151234 TGCT 151237 ||| Sbjct 4 AGCT 1 >seq664408 Length=200 Score = 150 bits (166), Expect = 2e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 151223 GTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGT 151282 ||||||||||| ||||| ||||| ||||| | ||| || ||| | | || ||| | ||| Sbjct 192 GTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGT 133 Query 151283 CAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTT 151342 ||||| |||||||||| ||||| | || || ||||| | ||||||| ||| || Sbjct 132 CAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGATT 73 Query 151343 GTCTTCCAAGCAGAGCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGT 151402 || ||||| |||||||||||||| || ||||| || ||||| ||| | ||||| |||||| Sbjct 72 GTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGGT 13 Query 151403 GTCTTCGGTGG 151413 || ||||| || Sbjct 12 GTATTCGGCGG 2 >seq41969 Length=1890 Score = 141 bits (156), Expect = 1e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 153164 CTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAA 153223 ||||||| | | || || ||||| || | ||||| || |||||||| || || ||| Sbjct 566 CTATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGAA- 508 Query 153224 TCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACG 153283 || | || | ||||||| |||||||||||| ||||| || || ||||| ||||| |||| Sbjct 507 TCCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACG 448 Query 153284 AAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCAACCTCATGAGAACTTCGTGTTCCCTG 153343 | ||| ||||||| ||| ||||| || || || |||||||| || | | ||||||| Sbjct 447 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 388 Query 153344 AAGAGGTATTGCCACGAGGCAACGCTCT 153371 | ||||| | ||||| || |||||||| Sbjct 387 AGGAGGTTCTACCACGTGGAAACGCTCT 360 >seq217498 Length=656 Score = 123 bits (136), Expect = 3e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 150860 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCA 150919 ||| | |||||||| || |||| ||||||||||| ||||||| || ||| | ||| | Sbjct 342 ACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACTTTATTGACC 401 Query 150920 GCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATC 150979 ||||| | || || | || ||||||||||| || || || || || ||||| || Sbjct 402 GCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATT 461 Query 150980 CGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTT 151039 ||||| || ||| |||||||| | | || || ||||| || ||||||||||| || || Sbjct 462 CGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTCTCTCTGGTGCTATTATT 521 Query 151040 CCTTCTTC 151047 ||| |||| Sbjct 522 CCTACTTC 529 >seq63256 Length=1526 Score = 120 bits (132), Expect = 3e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 152585 TGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGAC 152644 |||| || ||||| || || || ||||| ||||| | ||| |||| | || || Sbjct 19 TGCTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTT 78 Query 152645 TCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGT 152704 | ||| | ||||| || |||||||||||||| || ||||| ||||||||| | ||||| | Sbjct 79 TATGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAAT 138 Query 152705 TTGAACTGGCAC-GTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCT 152763 ||||||| || | |||| || | | || || || ||||| || | ||||||| ||| Sbjct 139 TTGAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGATCCA 197 Query 152764 ATCGCTGTTTTTGTT 152778 ||||| ||||||||| Sbjct 198 ATCGCGGTTTTTGTT 212 >seq466979 Length=342 Score = 109 bits (120), Expect = 6e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 153028 ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTT 153087 ||||||| ||||| || ||||| ||||| ||||||||| | || |||||||| || ||| Sbjct 225 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCTTT 166 Query 153088 GGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTT 153135 || |||||||| ||||||||| ||| | |||||||||||||| ||| Sbjct 165 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq623740 Length=225 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/190 (72%), Gaps = 8/190 (4%) Strand=Plus/Minus Query 152737 TACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTT--GTTAGCGTCTTTCTCATCT 152794 || ||||| || | |||||| ||| ||||| |||||| ||| || || || || | Sbjct 189 TATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATTT 131 Query 152795 ACCCTCTGGGT-----CAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAAT 152849 | || ||||| | || ||||||| || || || ||| || || |||||||| Sbjct 130 ATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAAT 71 Query 152850 CTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCATAT 152909 || |||||| | || ||| | |||||||| || || ||||| ||||| || |||||||| Sbjct 70 ATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 11 Query 152910 GATGGGTGTT 152919 |||||| ||| Sbjct 10 GATGGGAGTT 1 >seq634786 Length=218 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 152369 TGGATGACTGGCTTAAGA-GAGACCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTT 152427 ||||||||||| ||| || | ||||||||||||||||| || |||||||| || | || Sbjct 145 TGGATGACTGG-TTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTC 87 Query 152428 TTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGT 152487 ||||| ||||||| | ||| | || |||||| |||| ||||| ||||| | || | Sbjct 86 TTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCT 27 Query 152488 TGGTAT 152493 |||||| Sbjct 26 TGGTAT 21 >seq178439 Length=759 Score = 86.0 bits (94), Expect = 7e-12 Identities = 108/149 (72%), Gaps = 6/149 (4%) Strand=Plus/Plus Query 153202 TACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTAT 153261 || || ||||| || | |||||| | || | ||||||| |||||||||||| ||||| Sbjct 613 TATGACTTTGTTTCCTAGGAAATCCGTGCAACGGAAGATCGTGAATTTGAGACTTTCTAC 672 Query 153262 ACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCAACCT 153321 || || ||||| ||||| || || ||| |||||| ||| ||||| || || | Sbjct 673 ACCAAAAATATTCTTTTAAATGAGGGTATTCGTGGGTGGATGGCAGCTTAGGA------T 726 Query 153322 CATGAGAACTTCGTGTTCCCTGAAGAGGT 153350 ||||| || | | |||||||| ||||| Sbjct 727 CATGAAAATCTTATATTCCCTGAGGAGGT 755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545045556869600