Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq351396 223 4e-53 seq664408 131 2e-25 seq597246 125 8e-24 seq472319 104 3e-17 seq217498 104 3e-17 seq71309 84.2 2e-11 seq63256 84.2 2e-11 >seq351396 Length=451 Score = 223 bits (246), Expect = 4e-53 Identities = 245/326 (75%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 72892 GGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTC 72951 || || || || || ||||| ||||| || ||||| ||||| ||||||||||| || || Sbjct 418 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 359 Query 72952 GGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTC 73011 || ||||||||||||| ||||| ||||||||||||||||| |||||||||||| | Sbjct 358 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 299 Query 73012 GCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTC 73071 |||| | |||||||| | | ||||| || | | ||||| |||| ||||| ||| Sbjct 298 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 239 Query 73072 AACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCA 73131 ||||| || || ||||| ||||||||||| || || ||| | || || | Sbjct 238 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 179 Query 73132 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 73191 || |||| ||| | | ||| |||| || ||||| |||||||| ||||| ||| | ||| Sbjct 178 ACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 119 Query 73192 GCACACAACTTCCCACTAGACCTAGC 73217 || ||||||||||| ||||||||||| Sbjct 118 GCTCACAACTTCCCTCTAGACCTAGC 93 >seq664408 Length=200 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 72618 TGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGG 72677 ||| ||||||||||| ||||| | || || ||| || ||| | | || || | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 72678 TCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTT 72737 ||| || ||||||||||||||||| |||| || || |||| |||||||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 72738 CGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGG 72797 || ||||| ||||| |||||||| || ||||| || ||||| ||| ||||||||| || Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 72798 TATGTTCGGTGG 72809 | | ||||| || Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 125 bits (138), Expect = 8e-24 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 72391 GGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCA 72450 |||||||| | ||||| ||||| || |||||||||||| | |||| |||| || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 72451 ATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAAC 72510 || ||||| ||||| || || || |||||||| || || | || |||||||| || || Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 72511 GGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGT 72570 || |||||||| || || || || | |||||| | |||| | || || |||||| Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 64 Query 72571 AGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCA 72630 | |||||||||| | | | | || ||| | |||||||| ||| ||||||||| Sbjct 63 CGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCA 4 Query 72631 GC 72632 || Sbjct 3 GC 2 >seq472319 Length=337 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 72898 AAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGA 72957 || || || ||||| ||||| | ||||| ||||| ||||||||||| || || || | Sbjct 336 AAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCAA 277 Query 72958 TTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTT 73007 ||||||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct 276 TTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq217498 Length=656 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||| |||| |||||| || || | ||| | || ||||| ||||| || |||||||| Sbjct 330 TGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 389 Query 72304 TGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGAT 72363 | | | || || || || || ||| | || ||||||||||| |||||||| ||| Sbjct 390 ACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 449 Query 72364 ATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCT 72423 || || || || | || || ||| | |||||||| | ||||| ||||| || ||||| Sbjct 450 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTCTCTCT 509 Query 72424 GGTGCTGTAGTTCCATCTTC 72443 |||||| | |||| |||| Sbjct 510 GGTGCTATTATTCCTACTTC 529 >seq71309 Length=1427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 72895 TATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGT 72954 || || || || ||||| ||||| || ||||| ||||| || ||||| || || Sbjct 679 TACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTTC 738 Query 72955 AGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTC 73008 ||||||||||||| ||||||| ||||||||||| ||||| || ||||| ||| Sbjct 739 CGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTC 792 >seq63256 Length=1526 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 73589 TTGTTCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGA 73648 ||| | || ||||| || || |||||||||||| || || |||| ||| ||||| || Sbjct 18 TTGCTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGT 77 Query 73649 CTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAG 73708 |||||| |||||||| | || || | |||| ||| |||||||||||| | | || Sbjct 78 TTATGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAA 137 Query 73709 TTTGAGATTGC 73719 ||||| |||| Sbjct 138 TTTGAACTTGC 148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568103138314400