Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq307656 104 2e-17 seq6868 102 7e-17 seq113513 96.9 3e-15 seq83756 93.3 4e-14 seq12510 93.3 4e-14 seq84174 89.7 5e-13 seq117604 86.0 6e-12 seq12734 86.0 6e-12 seq213696 82.4 7e-11 >seq307656 Length=504 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || |||||||||||||| || || ||||| || | Sbjct 300 ATGCAAATCTTTGTCAAGACTTTGACGGGTAAAACTATTACCCTTGAGGTAGAGGCGTCT 359 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| |||||||| || || || || Sbjct 360 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGAATTCCGCCAGACCAG 419 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || ||||| ||||| | |||||| | | | | || || ||| Sbjct 420 CAGCGTCTCATTTTCGCCGGCAAACAATTAGAGGATGGTCGCACCCTCAGCGACTACAAC 479 Query 24884 ATTCAAAAGGAATCGACACTACACT 24908 || || |||||||| || || |||| Sbjct 480 ATCCAGAAGGAATCAACTCTCCACT 504 Score = 100 bits (110), Expect = 3e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || ||||| || ||||| ||||| |||||||| || || | Sbjct 72 ATGCAGATTTTCGTCAAGACTCTAACTGGCAAAACCATTACACTCGAAGTGGAGGCTTCG 131 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||| || || ||||||||||| ||||| || || || Sbjct 132 GACACTATTGATAATGTCAAGTCAAAAATTCAGGACAAAGAAGGCATACCACCAGACCAG 191 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCA--GATTAT 24880 |||||| | || || || || ||||| || || || || | || | | | || ||| Sbjct 192 CAACGTCTCATTTTCGCTGGTAAACAACTAGAAGA--CG-GTCGCACTCTAAGCGACTAT 248 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || || ||||| ||| | ||||| | ||||| Sbjct 249 AATATCCAAAAAGAGTCTACCCTTCACTTAGTGCTCAGATTGAGGGGAGG 298 >seq6868 Length=3892 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || ||||| || || || || Sbjct 3109 GATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGAGCAG 3050 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 |||||| | || |||| || | ||| ||||| ||||| ||||| || || || || | Sbjct 3049 CGACACCATCGACAACGTCAAGGCTAAA-ATCCAGGACAAGGAAGGGATTCCGCCGGACC 2991 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || || | ||||| |||||||| ||||||||||| | | | | || || | Sbjct 2990 AGCAGCGGCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACGCTCGCCGACTACA 2931 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||| || ||||| ||||| || ||| ||||| | || | ||||| ||| Sbjct 2930 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTCCGCGGCGGC 2881 >seq113513 Length=1062 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || ||||| || || || || Sbjct 784 GATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGAGCAG 843 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || || || |||| || || Sbjct 844 CGACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCACTCCGGACCA 903 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | |||||||| || || ||||| |||||| || | | | | || || || Sbjct 904 GCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACCCTCGCTGACTACAA 963 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| |||||||| || || || ||| ||||| Sbjct 964 CATCCAAAAGGAGTCCACCCTCCACCTGGTG 994 >seq83756 Length=1298 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || ||||| || || || || || || || || || | Sbjct 156 GATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTC 97 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||| ||||| || || || ||||| || || Sbjct 96 TGACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 37 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || || | |||||||| ||||| ||||| ||||| Sbjct 36 GCAGCGCCTCATCTTTGCTGGGAAGCAGCTTGAGGA 1 >seq12510 Length=3164 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || ||||| || || | Sbjct 2874 GATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACACTTGAAGTCGAGTCCTC 2933 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || |||||||| ||||| || | || || || || || Sbjct 2934 TGATACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGTGCATCCCCCCGGACCA 2993 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 | || ||||||| || || || |||||||||||| | | | || | ||||| || Sbjct 2994 GCGGCGACTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGGCGGATTACAA 3053 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || || ||| |||| | || |||| || ||| Sbjct 3054 CATCCAGAAGGAGTCCACCCTCCACCTGGTTCTCCGCCTGCGTGGTGGC 3102 >seq84174 Length=1294 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||| ||||| || || || ||||| ||||| || | | || ||||| ||||| ||| Sbjct 1 ATCCAGGACAAGGAGGGTATTCCTCCAGATCAGCAGAGGCTTATATTTGCTGGGAAGCAG 60 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910 ||||||||| | | | | || | ||||||||||| |||||||| || || || || | Sbjct 61 CTGGAGGATGGGCGTACCTTGGCGGATTATAACATCCAAAAGGAGTCCACTCTTCATCTT 120 Query 24911 GTGTTGCGATTGCGCGGAGGCGGAACT 24937 ||| |||| | || || || || ||| Sbjct 121 GTGCTGCGTCTCCGTGGTGGTGGTACT 147 >seq117604 Length=1036 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 24797 GACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAG 24856 ||||| || || || ||||| ||||| || ||| ||||||| || || || ||||||||| Sbjct 1036 GACAAGGAGGGCATTCCTCCGGATCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAG 977 Query 24857 GATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| | | | || |||| || ||||| || ||||| ||||| || ||| ||||| Sbjct 976 GATGGCCGCACCCTGGCAGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTG 920 >seq12734 Length=3143 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || ||||| || || || Sbjct 2992 GATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGAGCAG 3051 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || ||||||||| ||||| |||||||| || || || || Sbjct 3052 CGACACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCGCCGGACCA 3111 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGG 24854 || || | | ||| |||||||| ||||||| Sbjct 3112 GCAGCGGCTCAACTTCGCCGGGAAGCAGCTGG 3143 >seq213696 Length=664 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/206 (69%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 24729 CCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAA 24788 |||| || || || || ||||| || || || | ||||| | || | || || | Sbjct 240 CCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCTGACACCATTGACAATGTTAAGGCGA 299 Query 24789 AGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAAC---GTTTGATCTTTGCCGGGA 24845 ||||||| || || ||||| || || || || || || | | ||||||| ||||| | Sbjct 300 AGATCCAGGATAAGGAAGGCATCCCGCCGGACCAGCAGCAGCGACTGATCTTCGCCGGCA 359 Query 24846 AACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTAC 24905 | ||||||||||| | | | | ||||||| |||||||| ||||| || ||| | | Sbjct 360 AGCAGCTGGAGGACGGCCGCACCCTTGCAGATTACAACATTCAGAAGGAGTCCACAATCC 419 Query 24906 ACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| | || | || || ||| Sbjct 420 ACCTGGTGCTTCGCCTCCGTGGTGGC 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446151190210400