Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq12510 145 5e-30 seq5401 131 1e-25 seq6868 125 5e-24 seq138762 107 1e-18 seq113513 104 2e-17 seq87352 104 2e-17 seq307656 100 2e-16 seq213696 95.1 8e-15 seq117604 93.3 3e-14 seq12734 93.3 3e-14 seq99491 91.5 1e-13 seq83756 91.5 1e-13 seq385372 89.7 3e-13 seq88253 87.8 1e-12 seq11560 82.4 5e-11 >seq12510 Length=3164 Score = 145 bits (160), Expect = 5e-30 Identities = 163/216 (75%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||||||||| ||||| || |||| ||| |||| |||| Sbjct 3086 AGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCATCC 3027 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||||||| |||||||||||||| ||||||| | || | | ||||||||| Sbjct 3026 TCCAGCTGCTTTCCAGCGAAGATCAGTCGCCGCTGGTCCGGGGGGATGCACTCCTTGTCC 2967 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || | ||||| ||| || |||||| |||| || || Sbjct 2966 TGGATCTTCGCCTTCAC--AT--TGTCGATGGTATCAGAGGACTCGACTTCAAGTGTGAT 2911 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||||||||| |||||||||||||| Sbjct 2910 GGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 2875 >seq5401 Length=4188 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | |||| ||||||||| ||||||||||| | ||| |||| |||| Sbjct 4144 AGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGCGAGGGTGCGGCCATCC 4085 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || |||||||| |||| | |||||||| || Sbjct 4084 TCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCC 4025 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || ||| || || | ||| |||||| Sbjct 4024 TGAATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTC 3965 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||||||||| Sbjct 3964 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3933 >seq6868 Length=3892 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| | || |||| | || Sbjct 2897 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCC 2956 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||||||||| || || |||||||| |||| | ||| |||||||| Sbjct 2957 TCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGAATCCCTTCCTTGTCC 3016 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| |||||| | || | || || ||| || || | || |||||| Sbjct 3017 TGGATTTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTC 3076 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| |||||||| || ||||||||||| Sbjct 3077 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 3108 >seq138762 Length=915 Score = 107 bits (118), Expect = 1e-18 Identities = 153/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||| | ||| ||||| || ||| |||| | || Sbjct 696 AGCACGAGGTGCAGCGTGGACTCCTTCTGCACGTTGTAGTCAGAGAGGGTGCGGCCGTCC 637 Query 34826 TCCAGTTGCTTTCC-GGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || |||||||| ||||||||| || || |||||| | |||| | |||| |||||| Sbjct 636 TCGAGCTGCTTTCCCGGCGAAGATGAGACGCTGCTGGCCCGGCGGGATGCCCTGCTTGTC 577 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | || || ||| || || | || ||||| Sbjct 576 CTGGATCTTAGCCTTAACGTTGTCAATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGT 517 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| |||||||| || |||||||||||| Sbjct 516 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 483 >seq113513 Length=1062 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| |||||| || ||||| ||||| | ||| | | |||| Sbjct 996 AGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCC 937 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| || || |||||||| | | | ||||||||||| Sbjct 936 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTGATGCCCTCCTTGTCC 877 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || ||| || || | || |||||| Sbjct 876 TGGATCTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTC 817 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| |||||||| || ||||||||||| Sbjct 816 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 785 >seq87352 Length=1264 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 34796 ATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGT 34855 ||||| ||| | | || |||| |||| || || ||||| ||||||| || || || Sbjct 1262 ATGTTGTAGGCTGTCAGAGTGCGGCCATCCTCAAGCTGCTTGACGGCGAAAATGAGGCGC 1203 Query 34856 TGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT 34915 ||| ||||| | || | ||||||||||| | || || |||||| | || | Sbjct 1202 TGCGGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTG 1143 Query 34916 TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGC 34975 ||| || |||||| || | ||| |||||||| || ||||||||||| |||||||||||| Sbjct 1142 TCAGAGGACTCGACCTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGC 1083 Query 34976 AT 34977 || Sbjct 1082 AT 1081 >seq307656 Length=504 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| || || || | ||||| ||| ||| || || || |||||||| | Sbjct 298 CCTCCCCTCAATCTGAGCACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGCTT 239 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| | || || ||||| || || ||||| || || |||||||||||| | || Sbjct 238 AGAGTGCGACCGTCTTCTAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTGGT 179 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | || || ||||| | |||||| ||||| || |||| || || ||||| Sbjct 178 ATGCCTTCTTTGTCCTGAATTTTTGACTTGAC--AT--TATCAATAGTGTCCGAAGCCTC 123 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || ||||| || || || || ||||| || || |||||||| Sbjct 122 CACTTCGAGTGTAATGGTTTTGCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 >seq213696 Length=664 Score = 95.1 bits (104), Expect = 8e-15 Identities = 134/188 (71%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| || ||| ||||||||||||||| || || | ||| |||| | || Sbjct 429 AGCACCAGGTGGATTGTGGACTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCGTCC 370 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTC---GTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 ||||| ||||| |||||||||||||||| | |||||||| |||| | || ||||| Sbjct 369 TCCAGCTGCTTGCCGGCGAAGATCAGTCGCTGCTGCTGGTCCGGCGGGATGCCTTCCTTA 310 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | || | ||| || |||||| || | ||| ||| Sbjct 309 TCCTGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGGACTCGACCTCGAGGGTGATG 250 Query 34943 GTCTTTCC 34950 ||||| || Sbjct 249 GTCTTGCC 242 >seq117604 Length=1036 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 918 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCC 977 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || ||||||||||| || ||||| || | || | ||||||||||| Sbjct 978 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTC 1036 >seq12734 Length=3143 Score = 93.3 bits (102), Expect = 3e-14 Identities = 115/155 (74%), Gaps = 8/155 (5%) Strand=Plus/Minus Query 34827 CCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGT 34886 |||| ||||| ||||||||| | || || |||||||| |||| | || |||||||| | Sbjct 3143 CCAGCTGCTTCCCGGCGAAGTTGAGCCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCT 3084 Query 34887 TTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATG 34942 || ||| ||||| || | ||||| || || |||||| || | ||| ||| Sbjct 3083 GGATCTTTGCCTTGAC--AT--TGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATG 3028 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| |||||||| || ||||||||||| Sbjct 3027 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 2993 >seq99491 Length=1162 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||||||||| ||||| ||||| | || |||| | || Sbjct 882 AGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGCGTGCGGCCTTCC 823 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCC 34875 ||||| |||||||||||||||||||| || ||||||||| |||| | ||| Sbjct 822 TCCAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGTCTGGCGGGATCCC 773 >seq83756 Length=1298 Score = 91.5 bits (100), Expect = 1e-13 Identities = 117/159 (74%), Gaps = 8/159 (5%) Strand=Plus/Plus Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || ||||| || || ||||| || || |||||||| | || | ||||||||| Sbjct 1 TCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 60 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGT 34938 || | || ||| || || || | ||||| ||| || ||| || |||| ||| Sbjct 61 TCCTGGATCTTTGCCTTAAC--AT--TGTCGATGGTGTCAGAGGACTCCACCTCAAGGGT 116 Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || ||||||||||| |||||||||||||| Sbjct 117 GATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 155 >seq385372 Length=416 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||| | ||| ||||||||| | ||| ||||| | ||| || | | || Sbjct 194 AGCACGAGGTGTAGCGTGGACTCCTTCTGCACGTTGTAGTCGGCGAGGGTGTGGCCGTCC 135 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || || |||||||| |||| | |||||||| || Sbjct 134 TCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCC 75 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| |||||| | || | || || ||| || || | || |||||| Sbjct 74 TGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTC 15 Query 34946 TTTCCCGTGAGGGT 34959 || ||||| ||||| Sbjct 14 TTGCCCGTCAGGGT 1 >seq88253 Length=1256 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| ||||||||| ||||| || |||| ||| |||| |||| Sbjct 1156 AGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCATCC 1215 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || || ||||| || ||||||||||| || |||||||| Sbjct 1216 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 1253 >seq11560 Length=3259 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| | ||| ||||| | || |||| |||| Sbjct 1958 AGCACCAGGTGGAGCGTGGACTCCTTCTGGACGTTGTAGTCGGCGAGCGTGCGGCCATCC 2017 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCC 34875 ||||| ||||| ||||||||||| || || |||||||| | ||||| || Sbjct 2018 TCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCTCGGGCACACC 2067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323048477765420