Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq307656 138 9e-28 seq84174 111 1e-19 seq17435 82.4 6e-11 >seq307656 Length=504 Score = 138 bits (152), Expect = 9e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| | ||||| || ||||| || || |||||||| || ||||| || Sbjct 298 CCTCCCCTCAATCTGAGCACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGCTT 239 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || |||||||| ||||| | || | | |||||| || || || Sbjct 238 AGAGTGCGACCGTCTTCTAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTGGT 179 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || |||||||| || |||||||| |||||| | || | |||||| ||| || || Sbjct 178 ATGCCTTCTTTGTCCTG-AATTTTTGACTTGACATTATCAATAGTGTCCGAAGCCTCCAC 120 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || ||||||||||||| || || || || |||||||| Sbjct 119 TTCGAGTGTAATGGTTTTGCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 >seq84174 Length=1294 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||| | |||||| ||||| || ||||| |||||||||||||| | ||| || Sbjct 129 ACGCAGCACAAGATGAAGAGTGGACTCCTTTTGGATGTTATAATCCGCCAAGGTACGCCC 70 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| |||| | || |||||||| || ||||||||||| || Sbjct 69 ATCCTCCAGCTGCTTCCCAGCAAATATAAGCCTCTGCTGATCTGGAGGAATACCCTCCTT 10 Query 29691 GTCTTG 29696 ||| || Sbjct 9 GTCCTG 4 >seq17435 Length=2785 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | |||||||||||| || ||||| ||||| || ||||| ||||| || Sbjct 1841 TCCACCCCTGAGCCTCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGC 1782 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||||| ||| || | || || |||||| | || | |||||||| || || || Sbjct 1781 CAATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTGGGGG 1722 Query 29679 AATACCCTCTTTGTCTTG 29696 || || || ||||| || Sbjct 1721 GATGCCTTCCTTGTCCTG 1704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 382091578831380