Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq351396 253 2e-62 seq162061 208 8e-49 seq664408 158 1e-33 seq597246 158 1e-33 seq41969 125 8e-24 seq217498 120 3e-22 seq466979 100 3e-16 seq623740 89.7 6e-13 >seq351396 Length=451 Score = 253 bits (280), Expect = 2e-62 Identities = 272/360 (76%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 157678 GAAACAACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACG 157737 ||||| ||||||| || || || | |||||||| || |||||||| |||||||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 157738 TACAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTC 157797 || || || || ||||| || ||||| || || || | ||||||||||| ||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 157798 AACAACAGCAGAAGTCTTCACTTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTC 157857 |||||| | | | ||||||||| | || || |||||||| || || ||||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 157858 ACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 157917 ||||| | || | || || ||||| |||||||| || |||||||| |||||||| || Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 157918 ATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGT 157977 | ||||| |||| ||||| || | || || ||||| ||| || | ||||| ||| | Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 157978 CTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCT 158037 |||||||||||||| ||||| || ||||| || ||||||||||| || || || |||||| Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 208 bits (230), Expect = 8e-49 Identities = 257/349 (74%), Gaps = 2/349 (1%) Strand=Plus/Plus Query 159078 CTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCT 159136 |||||||| || ||||| ||||| ||||||||| | ||||| |||||||| || || ||| Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 159137 CATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAG 159196 || | | || || || ||||| || | ||||||||||| || || |||||||| Sbjct 276 GTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTC 334 Query 159197 CGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGT 159256 || |||||||| || ||||| || || || ||||||| || || ||| ||||| || Sbjct 335 TGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 394 Query 159257 GGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCC 159316 || |||||||| | ||| | || ||| | ||||| || || |||||||| | ||||| Sbjct 395 AGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 159317 CTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGG 159376 || ||||||||||||||||| || | |||| | || || |||| ||||||||||| Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 159377 GGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACC 159425 | || || ||||| || ||| ||||| || || ||||| ||| Sbjct 515 AGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACC 563 >seq664408 Length=200 Score = 158 bits (174), Expect = 1e-33 Identities = 150/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 157434 TGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGG 157493 |||||| ||||| || || || || ||||| | ||| || ||| | | || ||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 157494 TCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCT 157553 |||||| ||||| |||| ||||||| | || || ||||||| ||| |||| |||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 157554 CGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGG 157613 || ||||||||||||||||| || ||||||||||| ||||||||| | || || ||||| Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 157614 GGTATTCGGTGG 157625 |||||||| || Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 158 bits (174), Expect = 1e-33 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 157207 GGTTCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCA 157266 |||||| | | ||||| ||||| || ||||||||||| || ||||| |||| || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 157267 ATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAAC 157326 ||||| | ||||| ||||| || |||||||| ||||| ||||||||||| | ||||| Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 157327 GGTGGTCCTTTCCAACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGA 157386 |||||||||| | || | || | |||||| | | || | | |||||||| Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 64 Query 157387 CGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCG 157446 ||||||||||||||| || |||||| |||||||| || ||||| |||||| ||||| Sbjct 63 CGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCA 4 Query 157447 GC 157448 || Sbjct 3 GC 2 >seq41969 Length=1890 Score = 125 bits (138), Expect = 8e-24 Identities = 151/204 (74%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 159581 TATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGAT 159640 ||||||| | | || || ||||| || | ||||| || ||||| || || || || Sbjct 565 TATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGA-AT 507 Query 159641 CAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGA 159700 | | ||||| ||||||| |||||||| || ||||||||||| || |||||| | || || Sbjct 506 CCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGA 447 Query 159701 AGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGA 159760 || | ||||| ||| ||||| || ||||| || |||||||| | || ||||| || Sbjct 446 GGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGA 387 Query 159761 AGAAGTTCTACCAAGAGGTAACGC 159784 || ||||||||| | || ||||| Sbjct 386 GGAGGTTCTACCACGTGGAAACGC 363 >seq217498 Length=656 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||||| | ||| ||||| ||| | |||||| | || | || ||||||||||| | Sbjct 321 TTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 380 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTG-CTTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || || || | | |||||| |||| || ||| | || ||| | || || || Sbjct 381 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 439 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 ||| || ||||| || |||||||| || || ||| |||||||| | | ||||| ||||| Sbjct 440 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 499 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTC 157259 || |||||||||| || ||||| |||| Sbjct 500 TATTCTCTCTGGTGCTATTATTCCTACTTC 529 >seq466979 Length=342 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 159442 CAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 159501 ||||||||| || || |||||||| ||||||||||| ||| |||| ||||| || |||| Sbjct 227 CAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCT 168 Query 159502 TCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTT 159551 | || |||| ||||| || || || ||| | |||||||||||| | ||| Sbjct 167 TTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq623740 Length=225 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/190 (71%), Gaps = 8/190 (4%) Strand=Plus/Minus Query 159153 TACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT--GTCAGCGTCTTCCTTATCT 159210 || ||||| || | |||||| ||| || || |||||| || || |||||||| | Sbjct 189 TATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATTT 131 Query 159211 ACCCACTTGGTCAG-----TCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAAT 159265 | ||||| || | | | ||||||| || || ||| ||||| || || ||||| Sbjct 130 ATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAAT 71 Query 159266 ATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATAT 159325 ||| | ||| | || ||| | ||||| || || |||||||| | ||||| || ||||| Sbjct 70 ATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 11 Query 159326 GATGGGAGTT 159335 |||||||||| Sbjct 10 GATGGGAGTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540732970414400