Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq351396 223 4e-53 seq162061 206 3e-48 seq664408 161 1e-34 seq597246 127 2e-24 seq41969 123 3e-23 seq623740 98.7 1e-15 seq472319 84.2 3e-11 seq71309 82.4 9e-11 >seq351396 Length=451 Score = 223 bits (246), Expect = 4e-53 Identities = 248/330 (75%), Gaps = 1/330 (0%) Strand=Plus/Minus Query 178215 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTC 178274 |||||||| || || ||||| ||||| || ||||| || || || || |||||||| || Sbjct 418 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 359 Query 178275 GGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTC 178334 || || || |||||||||||||| ||||||||||| ||||| | ||||||||| | Sbjct 358 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 299 Query 178335 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTT 178394 || || ||||||||||| |||||||||||||| || | ||| | || ||||| || Sbjct 298 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 239 Query 178395 AACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAAC 178454 ||||| ||||| ||||| |||||||| || | | || | ||||| || || | || Sbjct 238 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 179 Query 178455 ACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAAT 178514 || ||||| || | ||||||| || ||| || |||||||| ||||||||| | ||| Sbjct 178 ACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 119 Query 178515 AGCACATAACTTCCCGCTTGATCTTGCAGC 178544 || || |||||||| || || || || || Sbjct 118 -GCTCACAACTTCCCTCTAGACCTAGCTGC 90 >seq162061 Length=815 Score = 206 bits (228), Expect = 3e-48 Identities = 250/338 (74%), Gaps = 2/338 (1%) Strand=Plus/Plus Query 179240 CTCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-T 179298 |||||||||| || || || ||||| || |||||| | || || |||||||| || || | Sbjct 214 CTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGT 273 Query 179299 CTCATCGGTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTT 179358 || || | | || ||||| ||||| || | || ||||||| || || || || ||| Sbjct 274 CTGTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTT 332 Query 179359 AGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGT 179418 |||||| || || || ||||| || ||||| |||||||||||||||| ||||| Sbjct 333 TCTGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGC 392 Query 179419 GTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAAC 179478 || || || || ||| ||||| | |||||||| ||||| || || || ||||| | ||| Sbjct 393 GTAGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 452 Query 179479 CCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCAT 179538 || ||||| |||||||||||||| || | | || | |||||||| | ||||||||| Sbjct 453 CCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCAT 512 Query 179539 GGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGA 179576 |||| || ||||| || || | | ||| || || || Sbjct 513 GGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGA 550 >seq664408 Length=200 Score = 161 bits (178), Expect = 1e-34 Identities = 153/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 177941 TGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCG 177999 |||||||||||| || |||||||| || || | || || ||||| | | || ||| | | Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGT-TTTCTTGATTTACCCTATTG 135 Query 178000 GTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGC 178059 ||||||| ||||| |||| ||||||| | || || ||||||| ||| |||| ||| Sbjct 134 GTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGA 75 Query 178060 TTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTG 178119 |||||||||| ||||| ||||| ||||||||||| || ||||||||| | ||||| |||| Sbjct 74 TTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTG 15 Query 178120 GGGTATTCGGTGG 178132 | |||||||| || Sbjct 14 GTGTATTCGGCGG 2 >seq597246 Length=243 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 177726 TATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCAC 177785 ||||| ||||| || ||||||||||| || | || |||| || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 177786 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 177845 || || || || |||||||| ||||| ||||||||||| | || || |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 177846 CAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAA 177905 | || | || | |||||| | | || | | |||||||| |||||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 177906 CTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGC 177955 ||| | |||| | |||||||| || ||||| |||||||||||| || Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGC 2 >seq41969 Length=1890 Score = 123 bits (136), Expect = 3e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 179744 CTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGA 179803 |||||||| | | || || ||||| || | ||||| ||||||||||| || || | Sbjct 566 CTATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGA-A 508 Query 179804 TCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATG 179863 || | ||||| ||||||| ||| || ||||| ||||| || || || |||||| | || | Sbjct 507 TCCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACG 448 Query 179864 AAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAG 179923 | || | ||||| ||| ||||| || ||||| || |||||||| | || ||||| | Sbjct 447 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 388 Query 179924 AAGAAGTCCTACCTAGTGGTAACGCACT 179951 | || || ||||| |||| ||||| || Sbjct 387 AGGAGGTTCTACCACGTGGAAACGCTCT 360 >seq623740 Length=225 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/152 (74%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 179353 TTCGTTAGTGTATTTCTCATCTACCCACTTGGA-----CAATCCAGTTGGTTCTTTGCGC 179407 || ||| |||||| || || || ||||| || | || | ||||||||||||||| Sbjct 152 TTTGTTTCTGTATTCCTTATTTATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGC 93 Query 179408 CATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACT 179467 | ||||| || || || || ||| ||||| | |||||||| ||||| || || || | Sbjct 92 CGAGTTTTGGCGTAGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATT 33 Query 179468 GGACACTCAACCCCTTTCACATGATGGGAGTT 179499 |||| | ||||| ||||| |||||||||||| Sbjct 32 GGACGTTGAACCCATTTCATATGATGGGAGTT 1 >seq472319 Length=337 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 178220 CAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCGGTCG 178279 ||| || || ||||| ||||| | ||||| || || || || |||||||| || || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 178280 TTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTT 178330 || |||||||||||||| ||||||||||| ||||| | |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq71309 Length=1427 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 178217 TTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCGG 178276 |||||| || || ||||| ||||| || ||||| || || | |||||||| || Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 178277 TCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTC 178331 || || |||||||||||||||| ||||||||||| ||||| | ||||| ||| Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTC 792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 600623657808800