Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_023602.1 Length=50781 Score E Sequences producing significant alignments: (Bits) Value seq250615 105 2e-18 >seq250615 Length=590 Score = 105 bits (116), Expect = 2e-18 Identities = 203/292 (70%), Gaps = 13/292 (4%) Strand=Plus/Plus Query 6679 GGCCGAGATCCTGATCTATGACGAGATCGATCCGTGGTTCGGTGTGTCCGCCGGCGACTT 6738 ||||||| | ||||| |||||||||| || ||||| || |||| | |||||| Sbjct 301 GGCCGAGGTGTCCATCTACGACGAGATCGG---GTTCTTCGGAGTCACCGCTGCCGACTT 357 Query 6739 CGCGAACGATTTGAACGCGTTGGAAGCCGACGAGATCGTCGTCGGGATCAACAGTCCCGG 6798 || || || || |||| | | |||| || | || |||||||| || || Sbjct 358 CGTCAAGGAGCTGGGCGCGGTCAACGCCGCGTCCATGAACATCCGGATCAACTCCCCGGG 417 Query 6799 CGGGATCGTGTTCGACGGGATCGCGATCATGAACGCGCTGAAGCG-GCATCCGGCGCG-- 6855 |||| ||| |||||||| ||||||||| ||||||| ||| ||| ||| ||||| Sbjct 418 CGGGGACGTTTTCGACGGCATCGCGATCCTGAACGCCCTGC-GCGCGCACCCGGCCAACA 476 Query 6856 -GATCGTCACCCGGATCGACGGGCTCGCCGCGTCGGCCGCGTCGTTTATCGCGATGGCCG 6914 || || ||| | ||||| ||||||||||||||||| || || ||||| ||||||| Sbjct 477 AGACGGTGACCGTG---GACGGCCTCGCCGCGTCGGCCGCATCCTTCATCGCCATGGCCG 533 Query 6915 GCGACGAGATTCAGACGTCGAAGTATGCCGA-GATGATGATTCACGAAGCGC 6965 | || | || ||| | | | | ||| ||||||||| ||||| |||| Sbjct 534 GTGATGCCATCGAGATGGCCCCCCA-GTCGATGATGATGATCCACGACGCGC 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161093049073880