Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq13300 136 3e-26 seq49510 127 2e-23 seq2610 118 8e-21 seq1192 100 2e-15 seq3253 98.7 7e-15 seq4181 87.8 1e-11 seq1011 86.0 5e-11 >seq13300 Length=3096 Score = 136 bits (150), Expect = 3e-26 Identities = 312/465 (67%), Gaps = 16/465 (3%) Strand=Plus/Plus Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 ||||| || || |||| || |||| ||||| ||||| || | | || || || | Sbjct 1048 TCAATGCCCTCATACAACGAGTCAATCTCAATGGTAGTCTGGGCAGTGGAGGAGAGGGTC 1107 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AGGCTT----TTGCTGATTGAT 282134 | || || | ||||| |||||||| || || || | || | | |||| | | ||| Sbjct 1108 CTCTTCGCCCTCTCACAAGCTGTCCTCAGCCTCCGGAGAGCCCTGGGGTTGCCGCT-GAT 1166 Query 282135 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTAT 282194 ||| |||| | || |||||||| |||| ||| | | || | | || | Sbjct 1167 ----ATCCTTTTTGTTCTTCCTCTTGAATTCTTGGACAAAGTGGTTGACCATTCTGTTGT 1222 Query 282195 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 282254 |||| || ||||| || | | ||| | || | || | | || | || | || | Sbjct 1223 CAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCAGTGGACTTGACCTCAAAGATACCTT 1282 Query 282255 CTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 282314 | |||| | | ||| | ||||||| ||| ||||| || | || || || || |||| Sbjct 1283 CCTCAATGGTAAGAAGGGAAACATCAAAGGTGCCACCTCCAAGGTCGAAGATGAGAACAT 1342 Query 282315 TCATTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 || | || | ||| || || ||||||||||| |||| |||||||||||||| Sbjct 1343 TCTTCTCGCCAACACTGGTGGCCTTCTTGTCAAGACCATAAGCAATAGCAGCAGCAGTTG 1402 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 ||||||| || || | || |||||| ||||||||||| ||| ||||| || ||||| | Sbjct 1403 GTTCATTGATGATCCGCATAACATTCAGACCAGCAATCACTCCAGCATCCTTGGTGGCCT 1462 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | || || || ||||| || || ||||| ||||| | ||| |||| Sbjct 1463 GCCTCTGGGAGTCGTTGAAGTAGGCAGGGACAGTGACAACAGCAT 1507 >seq49510 Length=1741 Score = 127 bits (140), Expect = 2e-23 Identities = 310/465 (67%), Gaps = 16/465 (3%) Strand=Plus/Minus Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 ||||| || || |||| || |||| ||||| || || || | | || || || | Sbjct 694 TCAATGCCCTCATACAACGAGTCAATCTCAATGGTGGTCTGGGCAGTGGAGGAGAGGGTC 635 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AGGCTT----TTGCTGATTGAT 282134 | || || || ||||| |||||||| || || || | || | | |||| | | ||| Sbjct 634 CTCTTCGCCCGCTCACAAGCTGTCCTCAGCCTACGGAGAGCCCTGGGGTTGCCGCT-GAT 576 Query 282135 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTAT 282194 ||| |||| | || |||||||| |||| ||| | | || | | || | Sbjct 575 ----ATCCTTTTTGTTCTTCCTCTTGAATTCTTGGACAAAGTGGTTGACCATTCTGTTGT 520 Query 282195 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 282254 | || || ||||| || | | ||| | || | || | | || | || | || | Sbjct 519 CGAAGTCCTCACCACCAAGGTGAGTGTCACCAGCAGTGGACTTGACCTCAAAGATACCCT 460 Query 282255 CTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 282314 | |||| | | ||| | ||||||| ||| ||||| || | ||||| || || |||| Sbjct 459 CCTCAATGGTAAGAAGGGAAACATCAAAGGTGCCACCTCCAAGGTCAAAGATGAGAACAT 400 Query 282315 TCATTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 || | || | ||| || || ||||||||||| |||| |||||||||||||| Sbjct 399 TCTTCTCACCAACGCTGGTGGCCTTCTTGTCAAGACCATAAGCAATAGCAGCAGCAGTTG 340 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | ||||| || || | || |||||| ||||||||||| || ||||| || ||||| | Sbjct 339 GCTCATTGATGATCCGCATAACATTCAGACCAGCAATCACACCAGCATCCTTGGTGGCCT 280 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 |||| || || ||||| || || ||||| || || | ||| |||| Sbjct 279 GTCTCTGGGAGTCGTTGAAGTAGGCAGGGACGGTGACAACAGCAT 235 >seq2610 Length=5087 Score = 118 bits (130), Expect = 8e-21 Identities = 531/826 (64%), Gaps = 24/826 (3%) Strand=Plus/Minus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||| |||||||| || | ||||||||| |||||||||||||| | || | Sbjct 2902 GTCATCACACCTCCAGCTGTCTCCAGACCAAGAGAGAGAGGAGTGACATCCAACAGAAGC 2843 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 281781 | | || | || || | | |||| ||||| | || || || | |||||| || Sbjct 2842 AGGTCCTGGACCTTCTCGTTGCCCTCACCACTCAAGA-TGGCAGCCTGGACAGCAGCTCC 2784 Query 281782 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 281839 || |||||||| |||||||| || | | || || || | || || ||||| || Sbjct 2783 GTAAGCAACAGCCTCATCAGGGTTGATGCTCTTGCAG--AGCTCCTTGCCGTTGAAGAAG 2726 Query 281840 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 | |||||| || ||||| ||||| | | || || ||||| | |||| || Sbjct 2725 TCCTGAAGAAGCTGCTGCACCTTGGGAATCCTGGTGGAACCACCAACCAGAACAACATCG 2666 Query 281900 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 281958 ||||| | | | || |||| || | |||| | || || || || || | || Sbjct 2665 TGCACA-GAGCTCTTGTCCATCTTGGCATCCCTCAGGCACTTCTCCACAGGCTCCATACA 2607 Query 281959 AGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 282016 || |||| || || || || || || | || | || | ||| | || Sbjct 2606 CTTCCTGAACAGATCCATGTTCATC--TCCTCAAACCTGGCACGGGTGATGGTGG-AGTA 2550 Query 282017 TAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 || ||||| || ||||||| || |||| || || || || || | | || || || Sbjct 2549 GAAGTCAATGCCCTCGAACAGTGAGTCAATCTCGATGGTGGTCTGGGCAGTTGATGACAG 2490 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--A 282133 | | || || | ||||| | |||||| || ||||| | ||| ||| | ||| | Sbjct 2489 AGTCCTCTTCGCCCTCTCACAAGATGTCCTCAGCCTTCGAAGAGCTCTTG--GGTTGCCA 2432 Query 282134 TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTA 282193 | | || | || | || |||||||| || | || | | || | | || Sbjct 2431 CTGATGTCCTTCTTGTTCTTCCTCTTGAACTCCTGGACGAAGTGGTTCACCATCCTGTTG 2372 Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 ||||| || ||||| || | | ||| | || | || || | || | || | || Sbjct 2371 TCAAAGTCCTCACCACCAAGATGAGTGTCACCAGCTGTGGCCTTAACCTCAAAGATACCC 2312 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 || |||| | | |||| |||||| ||| ||||| || | ||||| || || ||| Sbjct 2311 TCCTCAATGGTGAGGAGAGAGACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGCACA 2252 Query 282314 TTCATTTCTTTGTCT-TGGTTT-----TTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 ||| | || | ||||| || ||||||||||| |||| |||||||| || Sbjct 2251 TTCTTCTCACCAACACTGGTTGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCTGTG 2192 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || || || || |||| || |||||| | ||||||||| || ||||| || ||||| Sbjct 2191 GGCTCGTTGATGATTCGCAGAACATTGATACCAGCAATGACACCAGCATCCTTGGTGGCC 2132 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || || || || || || |||||||| ||||||| ||| |||| Sbjct 2131 TGCCTCTGCGAGTCATTGAAGTATGCAGGGACAGTAACAACAGCAT 2086 >seq1192 Length=6114 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | ||||||||||||||| ||||| || || ||| ||||| ||| |||||| Sbjct 3655 CCATAAGACAGAGCAGCAGCAGTTGGCTCATTGATGATCCTCTCAACATCAAGCCCAGCA 3714 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || ||||| || ||||| || | || | ||| || |||||||| ||||||||| Sbjct 3715 ATACGACCAGCATCCTTGGTGGCCTGCCGCTGAGCATCATTGAAATATGCTGGAACAGTA 3774 Query 282464 ATAACGGC 282471 || || || Sbjct 3775 ATCACAGC 3782 >seq3253 Length=4817 Score = 98.7 bits (108), Expect = 7e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || ||||||||| | | || ||||||||| ||||| | ||| || || | | |||| Sbjct 1817 TTCTTGTCAAGACCACAAGAAATAGCAGCAGCGGTTGGCTAATTGATGATGCGTATAACA 1758 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| ||| |||| || || || || || | ||||||||||| ||| Sbjct 1757 TTCAGACCAGCAATCACTCCAACATCCTTGGTTGCCTGCCTCGGGGAATCGTTAAAGTAT 1698 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 | ||| ||||| | ||| |||| Sbjct 1697 GTAGGGACAGTGACAACAGCAT 1676 >seq4181 Length=4513 Score = 87.8 bits (96), Expect = 1e-11 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 432283 TGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTG 432342 ||| || ||||||||||| |||||||||||||||||||| |||||||| ||| | || | Sbjct 2548 TGAAAGCAAAAGAAGGTCGGATTAGAGGAAATTTGATGGGGAAGCGTGTTGATTTCTCAG 2607 Query 432343 CACGTACAGTTATTACTTCTGATCCTAATAT 432373 | ||||| || || || | ||||| ||||| Sbjct 2608 CTCGTACGGTCATCACACCAGATCCCAATAT 2638 >seq1011 Length=6351 Score = 86.0 bits (94), Expect = 5e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||||| || |||||||||||||||||| || || || || |||| ||| |||||| Sbjct 2301 CCATACGAAAGAGCAGCAGCAGTTGGTTCGTTGATGATCCTTTGGACATCAAGTCCAGCA 2242 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 |||| || ||||| || || || || | || | ||| || || || || ||||| || Sbjct 2241 ATTCGACCAGCATCCTTGGTTGCCTGACGCTGAGCATCATTGAAGTAAGCTGGAACTGTG 2182 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGC 282498 || || || | | || ||| |||| |||||| Sbjct 2181 ATCACAGCCTTGGAAACAGATTTGCCAAGATAAGC 2147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3707923777276680