Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_023694.1 Length=78064 Score E Sequences producing significant alignments: (Bits) Value seq247333 172 3e-38 seq559477 127 1e-24 seq271691 93.3 2e-14 >seq247333 Length=596 Score = 172 bits (190), Expect = 3e-38 Identities = 224/310 (72%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 25284 CGGCCAACCTGACCTTCGACGACGCCCGTGCCAAGGGCTACGTCAAGGGCAACATGAAGA 25343 ||||| | |||||| ||||| ||||| || ||||| ||| ||||||||| || ||||| Sbjct 571 CGGCCGATCTGACCGAGGACGAGGCCCGCGCGAAGGGTTACCTCAAGGGCACCAAGAAGA 512 Query 25344 AGGAAGAGTTCTTCCGGGTCGCCAAGCGAGTCACCACCCCGCAGACCGTCTACAAGAAGC 25403 || | ||| ||||| | | | || ||||| ||| ||| |||||||||||| Sbjct 511 AGAACGAGGTCTTCTCGCTGCTCCGCCGGATCACCCAGCCGAAGATGATCTACAAGAAGC 452 Query 25404 AGAAGCTGGATCGGGACGATGTCCTGGACATCACCGACTTCGATGTGGTCGCGTGGCTCA 25463 || |||||| || || |||||| | |||||||||||| | | | | ||||| |||||| Sbjct 451 AGGCGCTGGACCGCGAGGATGTCATCGACATCACCGACATGAACGGGATCGCGGGGCTCA 392 Query 25464 AGGGTGAGATGCGCCTCATGCTCGACGAGGAGATCGCTCGCGCGGTTCTGATCGGCGACG 25523 || | ||| | ||||||| |||||||||| |||||| | || || |||| Sbjct 391 AGTGGGAGCTCAAGTACATGCTCATGGAGGAGATCGGCCGCGCGCTCCTCGTCTCGGACG 332 Query 25524 GTCGCTCGGCTGAGGACGAGGACAAGATCTCGGAGGAGCACATCCGTCCGATCGCCAACG 25583 |||| | || ||| ||||||||| | |||||| ||||||| |||||||| ||| Sbjct 331 GTCGTGAGATCGACGACCCCGACAAGATCACCGAGGAGAACATCCGGCCGATCGCGTACG 272 Query 25584 ACAGCGACCT 25593 || |||||| Sbjct 271 ACGACGACCT 262 >seq559477 Length=268 Score = 127 bits (140), Expect = 1e-24 Identities = 167/227 (74%), Gaps = 12/227 (5%) Strand=Plus/Minus Query 16788 CGAAACGATATCTTGGCTAAGCGATTCGGAATCCCTATGGAGGGTTACACCTACTTCTTC 16847 || ||||| ||| |||| ||||| || || ||||| ||||| ||| ||| ||||||||| Sbjct 267 CGTAACGAGATCCTGGCAAAGCGTTTTGGGATCCCCATGGAAGGTCTCACGTACTTCTTC 208 Query 16848 ACTTACGAAGAGAC---GATTCCTCATC----GTCGTCAAAGCTTCTGGCGCCAGCCTTG 16900 || ||||||||||| | ||| ||| | || | || ||||||| | ||| || Sbjct 207 ACGTACGAAGAGACCGAGCTTCACGATCCGCGGACGACCAA-CTTCTGGAGAATGCCCTG 149 Query 16901 TGCTCTAGGCGCTGACCTTTCGCAGGGTGACGACTTCTGTGCGTTCACTTTCTTCTTCCC 16960 ||||| || || ||||| || ||||||||||||||||||||||| ||| ||||||| Sbjct 148 CGCTCTTGGGGCGGACCTCTCTAGAGGTGACGACTTCTGTGCGTTCACGTTCCTCTTCCC 89 Query 16961 GCTTCGTAACGGGA--AGTTCGGAGTCAAGACTCGCAGCTACATCAC 17005 |||| |||| ||||||| | |||||| ||||||||| Sbjct 88 TCTTC--CGGGGGACGAGTTCGGTCTAGTGACTCGATCCTACATCAC 44 >seq271691 Length=555 Score = 93.3 bits (102), Expect = 2e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 59879 ATCATCTTCCGCAACTTCGCCGGCAAGGAAGGCATGTACAACGCAGAGGGTGATCGAAAC 59938 ||| ||||||| ||||||| |||||||||||| |||||||| ||||| || || Sbjct 287 ATCCTCTTCCGGAACTTCGGCGGCAAGGAAGGGCTGTACAACAAGGAGGGCGAGATGGAC 346 Query 59939 TTCTGCCTCCTTCTCGAGCCGGAGCTCGCGGAAGCACTCATGCGGGATGGTTGGAACGTC 59998 ||||| ||| | ||| ||||| |||| ||| | |||| ||| || |||||| || Sbjct 347 TTCTGTCTCGTGCTCCCCCCGGACGTCGCCCAAGACATGATGCAGGACGGCTGGAACATC 406 Query 59999 AAGCATCTCAAGGCCCGGGAAGAGGGCGA 60027 ||||| || ||| |||| || || | ||| Sbjct 407 AAGCAGCTGAAGCCCCGCGAGGATGACGA 435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247652830914500