Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_023735.1 Length=76797 Score E Sequences producing significant alignments: (Bits) Value seq247333 176 2e-39 seq559477 114 6e-21 seq271691 86.0 3e-12 >seq247333 Length=596 Score = 176 bits (194), Expect = 2e-39 Identities = 240/335 (72%), Gaps = 0/335 (0%) Strand=Plus/Minus Query 23246 CCGTTCTCCCGCATCAAGAGCCTGACGGCCAACCTGACCTTCGACGATGCCCGCGCCAAG 23305 |||||| ||||| ||||| | ||||| | |||||| ||||| |||||||| ||| Sbjct 596 CCGTTCGCCCGCGTCAAGTCGTTCGCGGCCGATCTGACCGAGGACGAGGCCCGCGCGAAG 537 Query 23306 GGTTACGTCAAGGGCAACATGAAGAAGGAAGAGTTCTTCCGGGTCGCCAAGCGAGTCACC 23365 |||||| ||||||||| || ||||||| | ||| ||||| | | | || ||||| Sbjct 536 GGTTACCTCAAGGGCACCAAGAAGAAGAACGAGGTCTTCTCGCTGCTCCGCCGGATCACC 477 Query 23366 ACCCCGCAGACCGTCTACAAGAAGCAGAAGCTGGATCGGGACGACGTCCTGGACATCACC 23425 ||| ||| |||||||||||||| |||||| || || || ||| | ||||||||| Sbjct 476 CAGCCGAAGATGATCTACAAGAAGCAGGCGCTGGACCGCGAGGATGTCATCGACATCACC 417 Query 23426 GATTTCGACGTTGTCGCCTGGCTCAAGGGCGAGATGCGTCTCATGCTCGATGAGGAAATC 23485 || | ||| |||| |||||||| | ||| | ||||||| ||||| ||| Sbjct 416 GACATGAACGGGATCGCGGGGCTCAAGTGGGAGCTCAAGTACATGCTCATGGAGGAGATC 357 Query 23486 GCTCGCGCGGTTCTCATCGGTGACGGTCGCTCGGCCGAGGACGAGGACAAGATCTCGGAG 23545 | |||||| | ||| || |||||||| | ||| ||| ||||||||| | ||| Sbjct 356 GGCCGCGCGCTCCTCGTCTCGGACGGTCGTGAGATCGACGACCCCGACAAGATCACCGAG 297 Query 23546 GAGCACATCCGTCCGATCGCTAACGATAGCGACCT 23580 ||| ||||||| |||||||| |||| |||||| Sbjct 296 GAGAACATCCGGCCGATCGCGTACGACGACGACCT 262 >seq559477 Length=268 Score = 114 bits (126), Expect = 6e-21 Identities = 164/227 (72%), Gaps = 12/227 (5%) Strand=Plus/Minus Query 13337 CGAAACGATATCTTGGCTAAGCGATTCGGAATCCCTATGGAGGGGTACACCTACTTCTTC 13396 || ||||| ||| |||| ||||| || || ||||| ||||| || ||| ||||||||| Sbjct 267 CGTAACGAGATCCTGGCAAAGCGTTTTGGGATCCCCATGGAAGGTCTCACGTACTTCTTC 208 Query 13397 ACTTATGAAGAGAC---GATTCCTCATC----GTCGTCAAAGCTTCTGGCGTCAGCCTTG 13449 || || |||||||| | ||| ||| | || | || ||||||| | ||| || Sbjct 207 ACGTACGAAGAGACCGAGCTTCACGATCCGCGGACGACCAA-CTTCTGGAGAATGCCCTG 149 Query 13450 TGCTCTCGGCGCTGACCTTTCGCAGGGCGATGATTTCTGTGCGTTCACGTTCTTCTTCCC 13509 ||||| || || ||||| || || || || |||||||||||||||||| ||||||| Sbjct 148 CGCTCTTGGGGCGGACCTCTCTAGAGGTGACGACTTCTGTGCGTTCACGTTCCTCTTCCC 89 Query 13510 TCTTCGAAACGGGA--AGTTCGGAATCAAGACTCGCAGCTACATCAC 13554 ||||| |||| ||||||| | |||||| ||||||||| Sbjct 88 TCTTC--CGGGGGACGAGTTCGGTCTAGTGACTCGATCCTACATCAC 44 >seq271691 Length=555 Score = 86.0 bits (94), Expect = 3e-12 Identities = 112/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 58703 ATCATCTTCCGCAACTTCTCCGGCAAGGAAGGTTTGTACAACTCGGAGGGTGACCGAAAC 58762 ||| ||||||| |||||| |||||||||||| |||||||| |||||| || || Sbjct 287 ATCCTCTTCCGGAACTTCGGCGGCAAGGAAGGGCTGTACAACAAGGAGGGCGAGATGGAC 346 Query 58763 TTCTGCCTCCTTCTCGAC---GACGCATTGGCCGAGGCACTCATTCGTGACGGCTGGAAC 58819 ||||| ||| | ||| | |||| | | || || || | || | |||||||||||| Sbjct 347 TTCTGTCTCGTGCTCCCCCCGGACG--TCGCCCAAGACA-TGATGCAGGACGGCTGGAAC 403 Query 58820 GTCAAGCATCTCAAGGCCCGAGAGGAGGGCGA 58851 ||||||| || ||| |||| ||||| | ||| Sbjct 404 ATCAAGCAGCTGAAGCCCCGCGAGGATGACGA 435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243631348866840