Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq307656 161 2e-34 seq12510 109 1e-18 seq113513 93.3 8e-14 seq83756 91.5 3e-13 seq17435 86.0 1e-11 >seq307656 Length=504 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| ||||| | || |||||||| || ||||| ||||| || |||||||| || Sbjct 300 TACCTCCCCTCAATCTGAGCACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGC 241 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| | | |||||||||||||||||| ||||| || || || | ||| || ||||| | Sbjct 240 TTAGAGTGCGACCGTCTTCTAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTG 181 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 |||| ||||| || || ||||| |||| || ||||| ||||| || || || || | Sbjct 180 GTATGCCTTCTTTGTCCTGAATTTTTGACTTGACATTATCAATAGTGTCCGAAGCCTCCA 121 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || || ||||| || | ||||| || || |||||||| Sbjct 120 CTTCGAGTGTAATGGTTTTGCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 Score = 113 bits (124), Expect = 9e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 82606 AGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTT 82665 |||| ||||| ||||| ||||| || || || || || | | ||| || |||| || Sbjct 504 AGTGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCTAATT 445 Query 82666 GTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCT 82725 |||| || || || || || | || || ||||| || ||||||||||| || || |||| Sbjct 444 GTTTGCCGGCGAAAATGAGACGCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGGATCT 385 Query 82726 TTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTG 82785 | | ||| ||||| ||||| || ||| | ||||| || | || || || || || | Sbjct 384 TCGATTTCACATTGTCAATGGTGTCAGACGCCTCTACCTCAAGGGTAATAGTTTTACCCG 325 Query 82786 TCAACGTCTTTACAAATATCTGCAT 82810 |||| ||||| ||||| || ||||| Sbjct 324 TCAAAGTCTTGACAAAGATTTGCAT 300 >seq12510 Length=3164 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| || || || || ||||| || || ||||| | || | | || Sbjct 3089 CGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCA 3030 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || |||||||| ||||| |||| | || || || || || | ||||| Sbjct 3029 TCCTCCAGCTGCTTTCCAGCGAAGATCAGTCGCCGCTGGTCCGGGGGGATGCACTCCTTG 2970 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || || |||||| | || ||||| | || || Sbjct 2969 TCCTGGATCTTCGCCTTCACATTGTCGATGGTATCAGAGGACTCGACTTCAAGTGTGATG 2910 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| | ||||| ||||| |||||||| Sbjct 2909 GTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 2875 >seq113513 Length=1062 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 82580 CCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATC 82639 |||||| || | | || || || | ||| || || || || || || || || || || Sbjct 1015 CCTACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTC 956 Query 82640 AGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGG 82699 || || | || || || || || || || ||||||||||| || | || || || || Sbjct 955 AGCGAGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGG 896 Query 82700 AGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTC 82759 || || || ||||| || || ||||| || || || || || || || || | || Sbjct 895 AGTGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTC 836 Query 82760 TACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 835 CACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 785 >seq83756 Length=1298 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || || ||||| || || ||||| Sbjct 1 TCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 60 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || |||||||| || ||||| || || || ||| | || || || | || || Sbjct 61 TCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATG 120 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| ||||| |||||||| Sbjct 121 GTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 155 >seq17435 Length=2785 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 ||| || || || ||||| || |||||||| || || ||||||| | | | || || Sbjct 1826 CAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAATGTGCGCCCATC 1767 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| | || ||||||||||| ||||| ||||| || ||||| || || |||||||| || Sbjct 1766 TTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTGGGGGGATGCCTTCCTTGTC 1707 Query 82718 TTGAA 82722 |||| Sbjct 1706 CTGAA 1702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 973446881435020