Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq6868 89.7 3e-13 seq307656 87.8 1e-12 seq17435 86.0 4e-12 >seq6868 Length=3892 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| |||| ||| ||||| |||| || Sbjct 2899 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTC 2958 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || || | |||||||| || |||| | ||||| ||||| Sbjct 2959 CAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTG 3018 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||||| || | | | ||| | ||||||||| ||||| || | |||||| || | Sbjct 3019 GATTTTAGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCT 3077 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 3078 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 3108 >seq307656 Length=504 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || ||||| | | ||| || || || || ||||||||| || || || ||| Sbjct 299 ACCTCCCCTCAATCTGAGCACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGCT 240 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| || | |||||| || || ||||| | ||| ||||| ||| | || Sbjct 239 TAGAGTGCGACCGTCTTCTAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTGG 180 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| |||||| || | |||| || | ||||| | |||| Sbjct 179 TATGCCTTCTTTGTCCTGAATTTT-TGACTTGACATTATCAATAGTGTCCGAAGCCTCCA 121 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || |||| || || || || ||||||||| Sbjct 120 CTTCGAGTGTAATGGTTTTGCCAGTTAGAGTCTTGACGAAAATCTGCATA 71 >seq17435 Length=2785 Score = 86.0 bits (94), Expect = 4e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||||||| |||||| |||||| || ||||||||||| | | |||||| | || || Sbjct 1823 CACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAATGTGCGCCCATCTTC 1764 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 ||| || ||||| |||||||| | | ||||| ||| | || | ||||| ||||| Sbjct 1763 CAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTGGGGGGATGCCTTCCTTGTC 1707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 326035229625600