Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq17435 95.1 3e-14 seq6868 93.3 1e-13 >seq17435 Length=2785 Score = 95.1 bits (104), Expect = 3e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 206258 TTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGT 206317 |||| || || ||||| || || ||| ||||| || || || || |||||||||| Sbjct 1702 TTCAGGACAAGGAAGGCATCCCCCCAGACCAGCAAAGGCTAATTTTTGCTGGAAAGCAGT 1761 Query 206318 TGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||||||||| | || ||||| ||||||||| ||||||||||||| ||||| || Sbjct 1762 TGGAAGATGGGCGCACATTGGCTGATTACAACATCCAGAAAGAGTCCACTCTCCA 1816 >seq6868 Length=3892 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| || ||||| |||| Sbjct 3093 AAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGAGCAGCGACACCATCGACAAC 3034 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || || ||||| ||| ||||||| || | || |||||| Sbjct 3033 GTCAAGGCTAAAATCCAGGACAAGGAAGGGATTCCGCCGGACCAGCAGCGGCTCATCTTC 2974 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || | ||||| |||||| ||||||| ||||| Sbjct 2973 GCCGGGAAGCAGCTGGAGGACGGCCGCACGCTCGCCGACTACAACATCCAGAAGGAGTCG 2914 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 2913 ACGCTGCACCTGGT 2900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1171733449811780