Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq351396 264 3e-66 seq664408 165 2e-36 seq597246 109 2e-19 seq472319 102 2e-17 seq59528 84.2 6e-12 seq71309 82.4 2e-11 >seq351396 Length=451 Score = 264 bits (292), Expect = 3e-66 Identities = 272/356 (76%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 20132 GAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACC 20191 || ||||||||| | ||| | || | |||||||| ||||| ||||| |||||||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 20192 TATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTC 20251 ||||| || || || ||||||||||| ||||| || || ||||||||||| ||| |||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 20252 AACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTC 20311 ||||| |||||| ||||||||||| | ||||| ||||| || ||||| || |||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 20312 GCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCC 20371 |||| || || || ||| ||||| || || || || |||||||| || ||||| || Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 20372 CTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAAT 20431 | | || | | ||||| || ||| ||||||||||||| || |||| || |||||| Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 20432 CTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 || || | || || ||||| ||||| |||||||| |||||||| || ||||| || Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 93 >seq664408 Length=200 Score = 165 bits (182), Expect = 2e-36 Identities = 158/200 (79%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 19881 GGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTAC 19939 ||||| |||||| ||||| ||||| ||||| || || |||| || ||||| | | ||| Sbjct 200 GGATTGCTGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGT-TTTCTTGATTTAC 142 Query 19940 CCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAAC 19999 || ||||||| || |||||||| |||| ||||||||| || || || |||| |||||| Sbjct 141 CCTATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAAC 82 Query 20000 TACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGT 20059 | ||| | |||||||| || || || ||||| || ||||| || ||||||||| | ||| Sbjct 81 TTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGT 22 Query 20060 GTGGCTGGTGTATTCGGTGG 20079 || |||||||||||||| || Sbjct 21 GTAGCTGGTGTATTCGGCGG 2 >seq597246 Length=243 Score = 109 bits (120), Expect = 2e-19 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 19670 CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGAC 19727 |||||||||||||| || || || || || | |||| | | || || |||||| Sbjct 234 CTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCG--GCGATCGGAT 177 Query 19728 TACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGAC 19787 | ||||| |||||||||||||||||| || ||||||| ||| | ||||| || || | Sbjct 176 TGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTC 117 Query 19788 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGT 19847 | | | || | || | |||||| | |||| | | ||| ||||| || |||| Sbjct 116 CTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGT 57 Query 19848 GGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCT 19903 |||||||||| | || | || ||| | ||||||||| |||||| ||||| ||| Sbjct 56 GGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGCT 1 >seq472319 Length=337 Score = 102 bits (112), Expect = 2e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 20167 CAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACG 20226 ||| ||||| ||||| ||||||| ||||| || || || ||||||||||| ||||| | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 20227 TTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTT 20277 || ||||||||||| ||| ||||||||| |||||| |||||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq59528 Length=1577 Score = 84.2 bits (92), Expect = 6e-12 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 20062 GGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTC 20121 ||||||||||||||| || || ||||| ||||| ||||| ||||| |||| || || Sbjct 417 GGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACCTCTA 475 Query 20122 GCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAG 20180 | ||| | | || | || |||| | ||| | || | |||||||| ||||| |||| Sbjct 476 GTTTGATCAGGGAAATTATTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAG 535 Query 20181 AAGAAGAGACCTATAACATCGTAGC 20205 | |||||||| ||||| || || || Sbjct 536 AGGAAGAGACTTATAATATTGTGGC 560 >seq71309 Length=1427 Score = 82.4 bits (90), Expect = 2e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20164 TTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGG 20223 |||||| ||||| ||||| |||||||| ||||| || || | |||||||| ||| Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 20224 ACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGC 20283 || || ||||||||||| || | ||||||||| |||||| | ||||| ||| | | Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTCTTGTC 797 Query 20284 TGC 20286 ||| Sbjct 798 TGC 800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147651432106440