Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq351396 260 4e-65 seq664408 114 4e-21 seq597246 105 2e-18 seq472319 102 2e-17 seq71309 82.4 2e-11 >seq351396 Length=451 Score = 260 bits (288), Expect = 4e-65 Identities = 254/327 (78%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 |||||||| ||||| ||||| |||||||||||||| || || || ||||| ||||| ||| Sbjct 418 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 359 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTT 29409 || || || ||||||||||||||| |||||| || |||||| ||||||||||| | Sbjct 358 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 299 Query 29410 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 29469 ||||| ||||| || ||||| || |||||| |||| || || || ||| ||||| || Sbjct 298 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 239 Query 29470 AATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAAT 29529 || || || ||||| || || ||||| || | | || | | ||||| || |||||| Sbjct 238 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 179 Query 29530 ACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAAT 29589 |||||||||||| | |||| || ||||| || || | ||||||||||| || |||||| Sbjct 178 ACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 119 Query 29590 GCTCATAACTTCCCACTTGATCTGGCT 29616 ||||| |||||||| || || || ||| Sbjct 118 GCTCACAACTTCCCTCTAGACCTAGCT 92 >seq664408 Length=200 Score = 114 bits (126), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 29009 GGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACC 29068 ||||| ||| |||||||||||||| || || || || |||| |||||| | | |||| Sbjct 200 GGATTGCTGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACC 141 Query 29069 CATTCGGTCAAGG----TTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTC 29124 | | |||||||| |||| | || | |||||||| || || || || | ||| Sbjct 140 CTATTGGTCAAGGAAGCTTCTCT----GATGGTATGCCTTTAGGAATATCTGGTATTTTC 85 Query 29125 AACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTG 29184 |||| ||| | || ||||| || || || ||||| || ||||| || ||||||||| | Sbjct 84 AACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTA 25 Query 29185 GGCGTTGCTGGAGTGTTCGGTGGC 29208 || || ||||| || ||||| ||| Sbjct 24 GGTGTAGCTGGTGTATTCGGCGGC 1 >seq597246 Length=243 Score = 105 bits (116), Expect = 2e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 28846 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 28905 || |||||| | ||||| |||||||||||||||||| || ||||||| ||| | ||| Sbjct 186 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 127 Query 28906 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATG 28965 || || || || | | || | || | |||||| | |||| || | ||| ||| Sbjct 126 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 67 Query 28966 GGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATAC 29025 || || |||||||||||||| | || | || ||| | || |||||| ||| |||||| Sbjct 66 GGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATAC 7 Query 29026 TCAGCT 29031 |||||| Sbjct 6 TCAGCT 1 >seq472319 Length=337 Score = 102 bits (112), Expect = 2e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 29295 CAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACG 29354 ||| ||||| ||||| ||||||| |||||| || || || ||||| ||||| ||||| | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 29355 TTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTT 29405 || ||||||||||||||| |||||| || |||||| |||||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq71309 Length=1427 Score = 82.4 bits (90), Expect = 2e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 29292 TTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGG 29351 |||||| ||||| ||||| |||||||||||||| || || | || ||||| ||| Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 29352 ACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGC 29411 || || |||||||||||||| | |||||| || |||||| | ||||| ||| | | Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTCTTGTC 797 Query 29412 TGC 29414 ||| Sbjct 798 TGC 800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145505344938280