Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq351396 257 5e-64 seq664408 156 1e-33 seq597246 123 7e-24 seq217498 113 1e-20 seq59528 104 7e-18 seq472319 89.7 1e-13 seq71309 87.8 5e-13 >seq351396 Length=451 Score = 257 bits (284), Expect = 5e-64 Identities = 267/350 (76%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 19351 GAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACT 19410 |||||||||||| | | |||| || | || ||||| ||||| ||||| ||||||||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 19411 TATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTC 19470 ||||| ||||| ||||||||||| |||||||| || | || ||||| || || ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 19471 AACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTT 19530 ||||| |||||| |||| ||||| ||||||||||||||||| || || || ||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 19531 GCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCC 19590 | || | || | || || ||||| |||||| | ||||| || || || ||||| || Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 19591 CTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAAC 19650 | |||| | | ||||| || ||| ||||||||||||| || |||| || ||||| Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 19651 CTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 || || | || ||||||||||||||||||||||| |||||||| || || Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 99 >seq664408 Length=200 Score = 156 bits (172), Expect = 1e-33 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 19100 GGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATC 19159 ||||| |||||| ||||||||||||||||| || || |||| || ||| | | || | Sbjct 200 GGATTGCTGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACC 141 Query 19160 CATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACT 19219 | |||||||||| ||| || | ||||||||| || || ||||| ||||||| Sbjct 140 CTATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACT 81 Query 19220 ACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTG 19279 ||| ||||||||||||| || || |||||||| ||||| || ||||||||| | |||| Sbjct 80 TTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTG 21 Query 19280 TCGCTGGTGTGTTCGGCGG 19298 | |||||||| |||||||| Sbjct 20 TAGCTGGTGTATTCGGCGG 2 >seq597246 Length=243 Score = 123 bits (136), Expect = 7e-24 Identities = 170/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 18889 CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGAC 18946 |||||||||||||| || || || || || | |||| | | || || |||||| Sbjct 234 CTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCG--GCGATCGGAT 177 Query 18947 TACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGAC 19006 | ||||| |||||||||||||||||| || ||||||| ||| | ||||| || || | Sbjct 176 TGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTC 117 Query 19007 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGT 19066 | | | || | || | |||||| | |||| || | ||| ||||| || |||| Sbjct 116 CTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGT 57 Query 19067 GGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCT 19122 |||||||||| | || | || ||||| ||||||||| |||||| ||||||||| Sbjct 56 GGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGCT 1 >seq217498 Length=656 Score = 113 bits (124), Expect = 1e-20 Identities = 132/176 (75%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || ||||||||||| ||||| ||||| || ||||||| | Sbjct 328 ACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCC 387 Query 18791 CGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTA 18849 | | | | | || ||| | ||| || ||||| |||||||| ||||| ||||| ||| Sbjct 388 CTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTA 446 Query 18850 GACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACAT 18905 || |||||||| || || ||||||||| | || | | |||||||||||||| || Sbjct 447 GATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATAT 502 >seq59528 Length=1577 Score = 104 bits (114), Expect = 7e-18 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 19282 GCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCG 19341 |||||||| |||||||| || ||||||||||| ||||| ||||| | || || || | | Sbjct 418 GCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTC-TAG 476 Query 19342 CTTGTGC-GTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGA 19400 ||| | | |||| || |||| | | |||| || | || ||||| ||||| ||||| Sbjct 477 TTTGATCAGGGAAATTATTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGA 536 Query 19401 AGAAGAGACTTATAACATTGTTGCTG 19426 |||||||||||||| ||||| |||| Sbjct 537 GGAAGAGACTTATAATATTGTGGCTG 562 >seq472319 Length=337 Score = 89.7 bits (98), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 19386 CAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCG 19445 ||| ||||| ||||| ||||||| |||||| ||||| ||||||||||| |||||||| | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 19446 GCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTT 19499 | || ||||| || || |||||||| |||||| |||| ||||| || Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTGTT 224 >seq71309 Length=1427 Score = 87.8 bits (96), Expect = 5e-13 Identities = 159/230 (69%), Gaps = 12/230 (5%) Strand=Plus/Plus Query 19284 TGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGT-----CC 19338 |||||| |||| | || ||||||||||| || || ||||| |||| | | | || Sbjct 575 TGGTGTATTCGACAATTCCCTATTTAGTGCTATACATGGTTC-CTTGCTTCTTGGTAACC 633 Query 19339 TCGCTTGTGCGT---GAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGG 19395 ||| | || ||||| | |||| | | |||| || | | ||||| ||||| Sbjct 634 TCGAGTTTGATCAAGGAAACAATTGAAAATGAATCT---AATGAGGTTTACAATTTTGGT 690 Query 19396 CAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTC 19455 ||||| |||||||||||||| ||||| || ||||| |||||| || | || ||| Sbjct 691 CAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTTCCGATTAATCTTC 750 Query 19456 CAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGC 19505 || || |||| |||||||| |||||| | || || || ||| |||| Sbjct 751 CAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTCTTGTCTGC 800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140032187722440