Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq88849 385 7e-101 seq12173 369 5e-96 seq353702 178 2e-38 seq7902 104 3e-16 seq317201 98.7 1e-14 >seq88849 Length=1251 Score = 385 bits (426), Expect = 7e-101 Identities = 449/599 (75%), Gaps = 14/599 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||| ||| || | || ||||||| | ||||||||||||||| || || | Sbjct 944 GAGCCGCTCCTGGCGGAGTCCTCGGACCGCTTCTCCATGTTCCCCATCCGCTTCCCGCAG 885 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||| | ||| || ||||||| ||||||||| ||||| ||||||||||| ||||| Sbjct 884 ATCTGGGAGTTCTAC-AAGAAGGCCGTGGCCTCCTTCTGGACGGCCGAGGAGGTGGACCT 826 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | | | ||| || |||||||| | || | ||||| ||||||||| |||||| Sbjct 825 CTCCTCGGACGCGCGCCACTGGGACACCACCCTCACCGACGGCGAGCGCCACTTCATCTC 766 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 ||||| |||||||| || ||||||| ||| ||||||||| ||||||||| || || Sbjct 765 CCACGTGCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCGTCCC 707 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 |||| ||| || || || || | ||||| || || ||||| ||||||||||||| Sbjct 706 GCTTCATGTCCGACGTGCAGGTGGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCA 647 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 |||| ||||||||||| || | |||||||| || ||||| |||||| || ||| | | Sbjct 646 TCGAGAACATCCACTCGGAGATGTACTCGCTGCTCATCGAGACCTACATCCGCGACGCCG 587 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 ||||||||||| |||||| |||||||||||||| | || | ||| | ||||||| Sbjct 586 CCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCG 527 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA-CACTTTGCCGAGCGGCTCGTCG 1456191 |||||||| | |||||| || ||| ||| | ||| || ||||| |||| | Sbjct 526 ACTGGGCGCTCCGCTGGATC------GACGGCGGCGAGCGCTTCGCGGAGCGCATCGTGG 473 Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 || || |||||||||||||||| ||||||||| |||||||||||||| ||||||| Sbjct 472 CGTTCGCATGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCA 413 Query 1456251 AGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||||| || ||||||||||| | || ||| |||||| | ||| |||||||| Sbjct 412 AGAAGCGGGGGCTCATGCCCGG-CCTCACCTTCTCCAACGAGCTCATCTCACGCGACGA 355 Score = 178 bits (196), Expect = 2e-38 Identities = 239/324 (74%), Gaps = 8/324 (2%) Strand=Plus/Minus Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGT-CGACCGACGT 1456512 ||||| ||||| ||||| || |||||| ||| ||| ||||| | ||| | || Sbjct 347 CACTGCGACTTCGCCTGCCTCCTCTACGAGATCCTCCGGGGCAAGCTGGACGA--GTCGC 290 Query 1456513 GCCCAAGC-AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGC 1456571 || | ||||| || ||||| || || |||||| ||||| ||| |||| ||| Sbjct 289 GCGTGTTCGAGATCGTCAGGGAGGCTGTTGACATCGAGCGCGAGTTCGTCTGCGACGCGC 230 Query 1456572 TGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGT 1456631 |||| |||||| |||||||||||| | | |||||| |||||||||| || || || Sbjct 229 TGCCATGCGCGCTCGTCGGCATGAACGGCGAC-CTCATGAGCCAGTACATCGAGTTC-GT 172 Query 1456632 CGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGT 1456691 |||||||||||||||| ||||||||||||||| | || |||| | ||||||| | Sbjct 171 CGCCGACCGCCTGCTCATGGCGCTCGGCTGCGGC-AGGCTCTACAACGCCACCAACCCCT 113 Query 1456692 TCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-G 1456750 || ||||||||| | ||||| || |||| |||||||||||||||||| ||||| | Sbjct 112 TCGACTGGATGGAGCTCATCTCCCTGCAGGGAAAGACCAACTTTTTCGAGAAGCGCGTCG 53 Query 1456751 GCGAGTACGCCAAGGCCGGCGTCA 1456774 |||||||| ||||| ||||| Sbjct 52 GCGAGTACCAGAAGGCATCCGTCA 29 >seq12173 Length=3197 Score = 369 bits (408), Expect = 5e-96 Identities = 424/565 (75%), Gaps = 13/565 (2%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||| || | || ||||||| | ||||||| ||||| |||| || | Sbjct 593 GAGCCGCTGCTGGCGGAGTCCTCGGACCGCTTCTCCATGTTCCCGATCCGGTACCCGCAG 652 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||| | ||| || ||||| | ||| ||||| ||||| || |||||||| ||||| Sbjct 653 ATCTGGGAGTTCTAC-AAGAAGGCGGTGGCGTCCTTCTGGACGGCGGAGGAGGTGGACCT 711 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | | ||||| || |||||||| |||| | |||||||||||| |||||| Sbjct 712 CTCCTCCGACGCGCGCCACTGGGACGGCACGCTCTCCCCCGACGAGCGCCACTTCATCTC 771 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 ||||| |||||||| || ||||||| ||| |||||||| ||||||||| ||| | Sbjct 772 CCACGTGCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCTCCA 830 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 | || ||| || ||||| | | ||||| || || ||||| ||||||||||||| Sbjct 831 GGTTCATGTCCGACGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCA 890 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 |||| ||||||||||| || | |||||||| ||| |||| |||||| || ||| | Sbjct 891 TCGAGAACATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCG 950 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 ||||||||||| |||||| |||||| ||||||| || || | ||| | ||||||| Sbjct 951 CCGAGAAGGACCGCCTCTTCCGCGCCGTCGACACCGTCCCCGCCGTGCGCCGCAAGGCCG 1010 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA-CACTTTGCCGAGCGGCTCGTCG 1456191 |||||| ||| |||||| || ||| ||| | ||| |||||||| ||||||| Sbjct 1011 TCTGGGCCATGCGCTGGATC------GACGGCGGCGAGCGCTTCGCCGAGCGACTCGTCG 1064 Query 1456192 GCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 ||| || ||||||||||||| || ||||||||| |||||||||||||| ||||||| Sbjct 1065 CCTTCGCATGCGTCGAGGGCATATTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCA 1124 Query 1456251 AGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||| || ||||||||||| || Sbjct 1125 AGAAGCGGGGGCTCATGCCCGGCCT 1149 Score = 181 bits (200), Expect = 2e-39 Identities = 236/318 (74%), Gaps = 10/318 (3%) Strand=Plus/Plus Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCC-GTCGACCGACGT 1456512 ||||| ||||| ||||| || |||||| | ||| || ||||| | ||| || Sbjct 1190 CACTGCGACTTCGCCTGCCTCCTCTACGGCCTCCTCAACAGCAAGCTTGACGAGTCCCGC 1249 Query 1456513 GCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCT 1456572 | || | ||||| ||| ||| |||||||| ||||||| ||||| || |||| |||| Sbjct 1250 GTCCGCG-AGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCATCTGCGACGCGCT 1308 Query 1456573 GCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTC 1456632 || || ||| |||||||||||||| | |||||| |||||||||||| | || ||| Sbjct 1309 CCCCTGCGCCCTCGTCGGCATGAACGCCGGC-CTCATGGGCCAGTACATTG-AGTTCGTC 1366 Query 1456633 GCCGACCGCCTGCTCGCGGCGCTCGGCTGCG--GAGAAGCACTACCGGACGGCCAACCCG 1456690 || |||||||||||| |||||||||||||| ||| | || || | ||||||||| Sbjct 1367 GCAGACCGCCTGCTCATGGCGCTCGGCTGCGCCAAGATGTACAAC---GCCGCCAACCCG 1423 Query 1456691 TTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT- 1456749 ||| ||||||||| | ||||| || |||||||||||||||| || ||| || || Sbjct 1424 TTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTTGAGAAGCGTGTC 1483 Query 1456750 GGCGAGTACGCCAAGGCC 1456767 ||||| ||| |||||| Sbjct 1484 GGCGACTACCAGAAGGCC 1501 >seq353702 Length=449 Score = 178 bits (196), Expect = 2e-38 Identities = 239/325 (74%), Gaps = 6/325 (2%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGT-CGACCGAC 1456510 ||||||| ||||| || || || |||||| ||| ||| ||||| | ||| | Sbjct 101 TGCACTGCGACTTCGCGTGCCTCCTCTACGAGATCCTCCGGGGCAAGCTGGACGAGTCCC 160 Query 1456511 GTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCG 1456570 | | | | ||||| || ||||| || || |||||| ||||| ||| |||| || Sbjct 161 GCGTCTTCG-AGATCGTCAGGGAGGCAGTTGACATCGAGCGCGAGTTCGTCTGCGACGCG 219 Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTG 1456630 |||||| |||||| | |||||||||| | | |||||| |||||||||| || || | Sbjct 220 CTGCCGTGCGCGCTCGTTGGCATGAACGGCGAC-CTCATGAGCCAGTACATCGAGTTC-G 277 Query 1456631 TCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCG 1456690 ||||||||||||||||| ||||||||| ||||| | || |||| | ||||||| Sbjct 278 TCGCCGACCGCCTGCTCATGGCGCTCGGGTGCGGC-AGGCTCTACAACGCCACCAACCCC 336 Query 1456691 TTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT- 1456749 ||| ||||||||| | ||||| || |||| |||||||||||||||||| ||||| Sbjct 337 TTCGACTGGATGGAGCTCATCTCCCTGCAGGGAAAGACCAACTTTTTCGAGAAGCGCGTC 396 Query 1456750 GGCGAGTACGCCAAGGCCGGCGTCA 1456774 ||||||||| |||||| ||||| Sbjct 397 GGCGAGTACCAGAAGGCCTCCGTCA 421 >seq7902 Length=3718 Score = 104 bits (114), Expect = 3e-16 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||| |||| ||||||| ||||||| ||| || |||||||||| |||| | | Sbjct 15 CTCCTCCAAGGCCATGTCCATCATGACCTCCTTCATCAACGACATATTCGAGAAGCTGGC 74 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 | |||||| | || || |||| ||||||| ||| ||| | | | ||||| Sbjct 75 CGGCGAGGCGGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCCCCTCCAGGGAGAT 134 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 ||||||| |||| ||||| || | | ||| || || |||| |||||||||||||||||| Sbjct 135 CCAGACCTCCGTCCGCCTCGTCCTCCCCGGGGAGCTCGCCAAGCACGCCGTCTCCGAGGG 194 Query 725138 CACCA 725142 ||||| Sbjct 195 CACCA 199 >seq317201 Length=491 Score = 98.7 bits (108), Expect = 1e-14 Identities = 92/116 (79%), Gaps = 6/116 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| ||||| ||||| |||||| || | | ||| ||||||||| || Sbjct 3 ATCTACAAGGTCCTCAAACAGGTCCACCCCGACACGGGT-----ATC-TCCAACAAGGCC 56 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGC 725026 |||| ||||||||||||||| ||||||||||| |||| || || | |||||| || Sbjct 57 ATGTTGATCATGAACTCGTTCGTCAACGACATCTTCGAGCGGATTGCCACCGAAGC 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7113556914561160