Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq113513 125 6e-24 seq6868 125 6e-24 seq12510 109 5e-19 seq385372 105 6e-18 seq84174 104 2e-17 seq83756 96.9 3e-15 seq117604 93.3 4e-14 seq5401 93.3 4e-14 seq17435 91.5 1e-13 seq307656 84.2 2e-11 seq272473 82.4 7e-11 seq213696 82.4 7e-11 seq59492 82.4 7e-11 seq37865 82.4 7e-11 seq12734 82.4 7e-11 >seq113513 Length=1062 Score = 125 bits (138), Expect = 6e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| || || | ||| | | || || |||||||| || ||||| Sbjct 976 CTCCTTTTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAA 917 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| || | || |||||||||| |||||| ||| | || Sbjct 916 GATGAGGCGCTGCTGGTCCGGAGTGATGCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGT 858 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||||| |||||||||| |||||| || || ||||||| || |||| Sbjct 857 TGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCA 798 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 797 CGAAGATCTGCAT 785 >seq6868 Length=3892 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || | ||| |||||| || |||||||| ||||| | || || |||| || Sbjct 2899 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTC 2958 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || || | |||||||||||||| |||| | ||||||||| Sbjct 2959 CAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTG 3018 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||| ||| || | |||| | | |||||||| |||||||||| |||||| || | Sbjct 3019 GAT-TTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCT 3077 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||||||| || ||||| || |||||||| Sbjct 3078 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 3108 >seq12510 Length=3164 Score = 109 bits (120), Expect = 5e-19 Identities = 143/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| |||| ||| || | || ||||||||||| || || || Sbjct 3066 CTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAA 3007 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||| ||||||||| || | || |||||||||| |||||| ||||| | | Sbjct 3006 GATCAGTCGCCGCTGGTCCGGGGGGATGCACTCCTTGTCCTGGATCTTCGCCTTCACATT 2947 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || || || || | ||||| || || || || | || ||||| Sbjct 2946 GTCGATGGTATCAGAGGACTCGACTTCAAGTGTGATGGTCTTGCCTGTGAGGGTCTTCAC 2887 Query 35725 AAATATCTGCATTCTGT 35741 ||| ||||||| ||||| Sbjct 2886 AAAGATCTGCA-TCTGT 2871 >seq385372 Length=416 Score = 105 bits (116), Expect = 6e-18 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 35534 TGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGC 35593 |||| ||| |||||| || | |||||| ||||| | ||| | |||| || |||||| Sbjct 185 TGTAGCGTGGACTCCTTCTGCACGTTGTAGTCGGCGAGGGTGTGGCCGTCCTCGAGCTGC 126 Query 35594 TTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTT 35653 || || || || || | |||||||||||| | || | || |||||| ||| ||||||| Sbjct 125 TTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATGCCCTCCTTATCCTGGATCTTT 66 Query 35654 TGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 ||| | |||| | | |||||||| |||||||||| |||||| || || ||||| Sbjct 65 GCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTGCCCGT 7 Query 35713 CA 35714 || Sbjct 6 CA 5 >seq84174 Length=1294 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||| | ||| | || ||||||||| ||||| ||||| ||| Sbjct 140 CCACCACGGAGACGCAGCACAAGATGAAGAGTGGACTCCTTTTGGATGTTATAATCCGCC 81 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| ||| | || ||||||||||| || |||||||| | || |||||| || | |||| Sbjct 80 AAGGTACGCCCATCCTCCAGCTGCTTCCCAGCAAATATAAGCCTCTGCTGATCTGGAGGA 21 Query 35630 ACGCTCTCCTTGTCC 35644 | | |||||||||| Sbjct 20 ATACCCTCCTTGTCC 6 >seq83756 Length=1298 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/160 (74%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || || |||||||| || ||||| || | ||||||||||||| ||| | || ||||||| Sbjct 1 TCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 60 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| ||||||| ||| | | | | | ||||| || |||||||| | ||||| Sbjct 61 TCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATG 120 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 || || || || | || |||||||| ||||||| ||||| Sbjct 121 GTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCA-TCTGT 159 >seq117604 Length=1036 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || |||| ||| || | || |||||||||||||| || || Sbjct 938 CTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAA 997 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||| |||||||| |||| ||||| || ||||||||| Sbjct 998 GATCAGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTC 1036 >seq5401 Length=4188 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||| || || || | ||| || | || || |||||||| || || || Sbjct 4124 CTCCTTCTGGATGTTATAGTCTGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 4065 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| || | || |||||| ||| ||||| ||| | || Sbjct 4064 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGAATCTTAGCCTTGA-CGT 4006 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| || |||||||||| ||||| || || || |||| || |||| Sbjct 4005 TGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCA 3946 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 3945 CGAAGATCTGCAT 3933 >seq17435 Length=2785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 35505 TATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAAT 35564 || ||||||| | | ||||| ||||||||| | || ||| || || |||||||||| Sbjct 1845 TAGTTCCACCCCTGAGCCTCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAAT 1786 Query 35565 CGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624 | ||||| || ||| | || |||| |||||| || ||||| || | || |||||||| | Sbjct 1785 CAGCCAATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTG 1726 Query 35625 AAGGAACGCTCTCCTTGTCC 35644 || | || ||||||||| Sbjct 1725 GGGGGATGCCTTCCTTGTCC 1706 >seq307656 Length=504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| ||| | ||| || | || || | || || || || || Sbjct 490 TCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCTAATTGTTTGCCGGCGAAA 431 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | |||| | ||||||||| |||||| |||| | | Sbjct 430 ATGAGACGCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGGATCTTCGATTTCACATTG 371 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || || ||||| | || || ||||||||||||||||| || ||| Sbjct 370 TCAATGGTGTCAGACGCCTCTACCTCAAGGGTAATAGTTTTACCCGTCAAAGTCTTGACA 311 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 310 AAGATTTGCAT 300 >seq272473 Length=553 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || | ||| |||||| || |||||||| |||||| Sbjct 310 CCACCACGGAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 251 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624 | || || |||| ||||||||||| || || || |||| ||||||||||||| Sbjct 250 AGCGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCG 196 >seq213696 Length=664 Score = 82.4 bits (90), Expect = 7e-11 Identities = 85/111 (77%), Gaps = 3/111 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| || | ||| || |||| ||||||||||| || || || Sbjct 409 CTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 350 Query 35605 TATCA---ACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||| | |||||||||||| || | || ||||| ||| |||||| Sbjct 349 GATCAGTCGCTGCTGCTGGTCCGGCGGGATGCCTTCCTTATCCTGGATCTT 299 >seq59492 Length=1577 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | ||| |||||| || |||||||| ||||||| || || | || || Sbjct 285 CACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTCCGGCCATCCTC 226 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624 ||||||||| || ||||| |||| ||||||||||||| Sbjct 225 CAGCTGCTTCCCGGCAAAGATCAGACGCTGCTGGTCCG 188 >seq37865 Length=1986 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || | |||||| ||||| | ||| || |||| || |||||||| ||||| || Sbjct 102 CTCCTTCTGCACGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 43 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 || | |||||||||||| | || | || |||||||||| Sbjct 42 GATGAGCCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 3 >seq12734 Length=3143 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 35586 CCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCA 35645 |||||||||| || || || | | |||||||||||||| || | | ||||||||| Sbjct 3143 CCAGCTGCTTCCCGGCGAAGTTGAGCCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCT 3084 Query 35646 TGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||||| ||| | | | | | |||||||| || ||||| | ||||| || | Sbjct 3083 GGATCTTTGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCT 3024 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 | ||||||| || || || || |||||||| ||| Sbjct 3023 TGCCCGTCAGGGTCTTGACGAAGATCTGCATCCTG 2989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447039728994400