Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq307656 143 3e-29 seq385372 120 3e-22 seq6868 104 2e-17 seq213696 102 8e-17 seq113513 98.7 1e-15 seq32537 86.0 6e-12 seq272473 84.2 2e-11 seq99491 84.2 2e-11 >seq307656 Length=504 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || | || | ||| | ||| || || || || ||||| || || ||||||| Sbjct 298 CCTCCCCTCAATCTGAGCACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGCTT 239 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || || ||||| || || ||||| | ||| ||||| || || ||| Sbjct 238 AGAGTGCGACCGTCTTCTAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTGGT 179 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || ||||||||| ||||| || | ||||| || | ||||| Sbjct 178 ATGCCTTCTTTGTCCTGAATTTTTGACTTGACATTATCAATAGTGTCCGAAGCCTCCACT 119 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||||||||| || |||| ||| || |||||||| ||||| Sbjct 118 TCGAGTGTAATGGTTTTGCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 Score = 129 bits (142), Expect = 6e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || |||||||| || ||||||||||||| | |||| || || || | || Sbjct 503 GTGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCTAATTG 444 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 |||||| || ||||| | ||||||||| || ||||| || ||||| || || || || || Sbjct 443 TTTGCCGGCGAAAATGAGACGCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGGATCTT 384 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || ||| | ||||| |||| || || || || ||||| |||||||| || Sbjct 383 CGATTTCACATTGTCAATGGTGTCAGACGCCTCTACCTCAAGGGTAATAGTTTTACCCGT 324 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || |||||||| Sbjct 323 CAAAGTCTTGACAAAGATTTGCAT 300 >seq385372 Length=416 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | |||||||||||||||||| ||||| || | |||||||||| | | |||||| Sbjct 200 AGGCGGAGCACGAGGTGTAGCGTGGACTCCTTCTGCACGTTGTAGTCGGCGAGGGTGTGG 141 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || || | |||||||| |||||||| ||||| || Sbjct 140 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATGCCCTCC 81 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || ||| ||||| ||| | |||||| ||||| || || || Sbjct 80 TTATCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTG 21 Query 134676 ATGGTTTTACCGGT 134689 ||||| || || || Sbjct 20 ATGGTCTTGCCCGT 7 >seq6868 Length=3892 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| ||||| || ||||| || |||||||||||| | Sbjct 2882 CCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 2941 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| || || || || || | |||||||| || ||||| Sbjct 2942 AGCGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGA 3001 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || ||||| ||||| ||| | |||||| ||||| Sbjct 3002 ATCCCTTCCTTGTCCTGGATTTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 3061 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | || || ||||| || ||||| || Sbjct 3062 TCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 3111 >seq213696 Length=664 Score = 102 bits (112), Expect = 8e-17 Identities = 146/205 (71%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| | ||||| ||||| ||||||||||| || || Sbjct 444 CCACCACGGAGGCGAAGCACCAGGTGGATTGTGGACTCCTTCTGAATGTTGTAATCTGCA 385 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAAC---GCTGCTGATCGGGC 134603 | |||| | ||| || ||||| ||||| || || |||| | ||||||| || ||| Sbjct 384 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGTCGCTGCTGCTGGTCCGGC 325 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || || || || || || || ||| | ||||| || || || Sbjct 324 GGGATGCCTTCCTTATCCTGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGGACTCG 265 Query 134664 ACGTCGAGAGTAATGGTTTTACCGG 134688 || ||||| || ||||| || |||| Sbjct 264 ACCTCGAGGGTGATGGTCTTGCCGG 240 >seq113513 Length=1062 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| || ||||| |||||||| ||||||||||| | Sbjct 1011 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCG 952 Query 134547 ACGGT-GTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | ||| || | || |||||||| ||||| ||||| || | |||||||| || || | Sbjct 951 AGGGTCCTGCCA-TCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGT 893 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || || || || || ||||| ||| | |||||| ||||| Sbjct 892 GATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCAC 833 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | || || ||||| || ||||| || Sbjct 832 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 782 >seq32537 Length=2132 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || ||||||||||| || ||||||||||| ||| |||| | || ||| Sbjct 107 ACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCG 48 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCC 134611 ||||| ||||| || || || | |||||||| || || || ||||| Sbjct 47 AGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCCGGAGGGATGCC 1 >seq272473 Length=553 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| ||||| || ||||| || |||||||||||| | Sbjct 310 CCACCACGGAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 251 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| || || || || |||| ||||||||| || ||||| Sbjct 250 AGCGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 191 Query 134607 ATGCCT 134612 || ||| Sbjct 190 ATTCCT 185 >seq99491 Length=1162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| || | ||| ||||| ||||| || ||||| || |||||||||||| || Sbjct 897 CCGCCTCGGAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCA 838 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| || || || || |||| |||||||| || ||||| Sbjct 837 AGCGTGCGGCCTTCCTCCAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGTCTGGCGGG 778 Query 134607 ATGCCT 134612 || ||| Sbjct 777 ATCCCT 772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501189821173600