Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq351396 262 4e-65 seq162061 242 4e-59 seq664408 152 6e-32 seq41969 147 2e-30 seq597246 141 1e-28 seq217498 122 1e-22 seq63256 118 1e-21 seq623740 113 5e-20 seq466979 104 3e-17 seq178439 100 3e-16 seq472319 86.0 7e-12 >seq351396 Length=451 Score = 262 bits (290), Expect = 4e-65 Identities = 274/360 (76%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 158303 GAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACC 158362 ||||| ||||||| || || || | ||||| || || |||||||| |||||||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 158363 TACAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 158422 || || || || || || ||||| || || || || || ||||||||||| ||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 158423 AACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTC 158482 |||||||| ||||| || ||||||||| | ||||| |||||||| || || ||||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 158483 ACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCC 158542 || || | || | || ||||| |||||||| || |||||||| |||||||| || Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 158543 ATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGT 158602 | ||||| |||| ||||| || | || || ||||| ||| | | ||||| ||| | Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 158603 CTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCT 158662 |||||||||||||| ||||| || ||||| || ||||||||||| || || || |||||| Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 242 bits (268), Expect = 4e-59 Identities = 260/341 (76%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 159677 TTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTC 159736 || |||||||||| || || || || |||||||| ||| |||| ||||||||| |||||| Sbjct 211 TTTCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTC 270 Query 159737 G-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 159795 | ||| ||| | || ||||| ||||| || | ||||||||||| || || |||||| Sbjct 271 GGTCT-GTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTT 329 Query 159796 GTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTC 159855 || ||||||||||| ||||||||||| || ||| ||||||||||| || ||||| Sbjct 330 GTTTCTGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTT 389 Query 159856 GGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTC 159915 || ||||||||||| ||| ||||| | | ||| | || || || || || ||||| | Sbjct 390 GGCGTAGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTG 449 Query 159916 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATC 159975 ||||| || ||||||||||||||||| || || |||| | || ||| | || || || Sbjct 450 AACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATT 509 Query 159976 CATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGA 160016 ||||| || || ||||| ||||| | ||||| || || || Sbjct 510 CATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGA 550 >seq664408 Length=200 Score = 152 bits (168), Expect = 6e-32 Identities = 149/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 158059 TGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGG 158118 ||| ||||| || ||||| || || || || | ||| || ||| | | || ||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 158119 TCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCT 158178 |||||| ||||| |||| ||||||| | || || ||||||| ||| |||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 158179 TGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGG 158238 ||||||||| ||||| ||||||||||||||||| || ||||| ||| | ||||| ||||| Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 158239 GGTATTCGGTGG 158250 |||||||| || Sbjct 13 TGTATTCGGCGG 2 >seq41969 Length=1890 Score = 147 bits (162), Expect = 2e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 160184 CTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGA 160243 |||||||| | | || || ||| | ||| | ||||| || ||||| || ||||| | Sbjct 566 CTATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGA-A 508 Query 160244 TTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATG 160303 | | ||||| ||||||| |||||||||||| ||||||||||| || || || || || | Sbjct 507 TCCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACG 448 Query 160304 AAGGACTTCGTGCTTGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTG 160363 | || ||||||| ||||||||| || ||||| || |||||||| |||| ||||||| Sbjct 447 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 388 Query 160364 AGGAAGTACTACCTAGAGGTAACGCACT 160391 |||| || ||||| | || ||||| || Sbjct 387 AGGAGGTTCTACCACGTGGAAACGCTCT 360 >seq597246 Length=243 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 157844 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCAC 157903 ||||| ||||| || ||||||||||| || |||||| ||| || ||||| | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 157904 TTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTC 157963 || ||||| || |||||||| |||||| |||| |||||| | || || |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 157964 CAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAA 158023 | || | || | |||||| | | || | | |||||||| |||||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 158024 CTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCT 158074 || || |||||| |||||||| || ||||| ||| ||||| || ||| Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGCT 1 >seq217498 Length=656 Score = 122 bits (134), Expect = 1e-22 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 ||||||| | ||| |||| || | |||||| | || | || ||||||||||| | Sbjct 320 CTTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 379 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157793 |||||| ||||| || | | |||||| ||||| || || |||||||| ||||||| | Sbjct 380 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCC 438 Query 157794 CCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 157853 | || || || ||||| || || || || || ||| ||||||| | | ||||| |||| Sbjct 439 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 498 Query 157854 ACATCATCTCTGGTGCAGTTGTTCCTAGTTC 157884 | || |||||||||| || |||||| ||| Sbjct 499 ATATTCTCTCTGGTGCTATTATTCCTACTTC 529 >seq63256 Length=1526 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 159607 CTACTTTGGGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATT 159666 ||||| ||||| || || | ||||| || || |||||||| || | || || | Sbjct 21 CTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTTTA 80 Query 159667 TGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTT 159726 ||| | ||||| ||||||||||| || || || || |||||||| ||| |||| |||||| Sbjct 81 TGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTT 140 Query 159727 GAAATTGCTC-GTCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTAT 159785 ||| |||||| |||| ||| | || ||||| ||||| || | ||||||| ||| || Sbjct 141 GAACTTGCTCGGTCT-GTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGATCCAAT 199 Query 159786 TGCTGTTTTTGT 159797 || |||||||| Sbjct 200 CGCGGTTTTTGT 211 >seq623740 Length=225 Score = 113 bits (124), Expect = 5e-20 Identities = 143/191 (75%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 159756 TTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT--GTCAGCGTATTCCTTATC 159813 ||| ||||| || | |||||| ||| || || |||||| || ||||||||||| Sbjct 190 TTATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATT 132 Query 159814 TATCCACTGGG-TCAGTC--TTCA--TGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAA 159868 ||||||||||| | | | ||| ||||||||||| || ||||| || |||||||||| Sbjct 131 TATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAA 72 Query 159869 TCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATA 159928 | ||| ||||| | | ||| | || || || || || ||||| | ||||| || |||| Sbjct 71 TATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATA 12 Query 159929 TGATGGGAGTT 159939 ||||||||||| Sbjct 11 TGATGGGAGTT 1 >seq466979 Length=342 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 160036 GCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 160095 || ||| | || ||||||| ||||| |||||||| ||||||||||| ||| |||| ||| Sbjct 237 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGG 178 Query 160096 TCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 160155 || || ||||| |||||||| ||||| || || || ||| | ||||| || ||| | ||| Sbjct 177 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq178439 Length=759 Score = 100 bits (110), Expect = 3e-16 Identities = 104/137 (76%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 160238 AGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTAT 160297 |||| || | ||| | ||||||| |||||||||||| ||||||||||| || || || | Sbjct 629 AGGAAATCCGTGCAACGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTT 688 Query 160298 TGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCT 160357 | ||||| || |||||| ||||||||| || ||| |||||||| |||| | Sbjct 689 TAAATGAGGGTATTCGTGGGTGGATGGCAGCTTAGGAT------CATGAAAATCTTATAT 742 Query 160358 TCCCTGAGGAAGTACTA 160374 |||||||||| || ||| Sbjct 743 TCCCTGAGGAGGTTCTA 759 >seq472319 Length=337 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 158339 AAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGGTCGT 158398 || || |||||||| ||||||| || || || || || || ||||| || || || | Sbjct 336 AAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCAA 277 Query 158399 TTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTT 158448 || ||||||||||| ||| ||||||||||| ||||| || |||||||| Sbjct 276 TTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568252285896000