Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq351396 298 6e-76 seq162061 203 4e-47 seq664408 158 1e-33 seq597246 129 7e-25 seq623740 102 9e-17 seq472319 91.5 2e-13 seq466979 89.7 6e-13 seq71309 89.7 6e-13 >seq351396 Length=451 Score = 298 bits (330), Expect = 6e-76 Identities = 282/360 (78%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 160587 GAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACC 160646 ||||| ||||||| || || || | ||||| || || ||||||||||||||||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 160647 TACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTC 160706 || || || || || || |||||||| || || || || |||||||||||||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 160707 AACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTC 160766 |||||||| ||||| | ||||||||| |||| || ||||||||||| |||||||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 160767 ACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 160826 |||||| | ||| |||| || ||||| |||||||| || |||||||| |||||||| || Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 160827 ATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGT 160886 | | ||| |||||||||| || | || || ||||| || | | || || ||| | Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 160887 CTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCT 160946 |||||||||||||| ||||| || ||||| || ||||||||||| || ||||| |||||| Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 203 bits (224), Expect = 4e-47 Identities = 256/349 (73%), Gaps = 2/349 (1%) Strand=Plus/Plus Query 161991 CTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTT 162050 ||||| || || || || ||||| || |||||| | || || |||||||| || || | Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 162051 ATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGC 162110 || | || || || ||||| || | ||||||||||| || || |||||||| Sbjct 276 GTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCT 335 Query 162111 GTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTG 162170 || |||||||| || ||| |||| || || ||||||| || || ||| ||||| || Sbjct 336 GTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTA 395 Query 162171 GCAGCAATCTTTAGATTCCTGTTGTTTCTT-CAAGGATTCCATAACTGGACCCTGAACCC 162229 |||||||| ||| ||||| | | |||||| |||||||| ||||| ||||| ||||||| Sbjct 396 GCAGCAATATTTCGATTCATCCT-TTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 162230 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGG 162289 || ||||||||||||||||| || || |||| | || || |||| |||||||| || Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 162290 AGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACC 162338 || || || ||||| || ||| ||||| || || ||||| ||| Sbjct 515 AGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACC 563 >seq664408 Length=200 Score = 158 bits (174), Expect = 1e-33 Identities = 150/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 160343 TGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGG 160402 ||| ||||| || ||||| || || || || ||||||| ||| | | || ||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 160403 TCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCT 160462 |||||| ||||| |||| ||||||| | || || ||||||| ||| |||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 160463 TGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGG 160522 ||||||||| ||||| ||||| |||||||||||||| ||||||||| | || || ||||| Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 160523 GGTATTCGGTGG 160534 |||||||| || Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 129 bits (142), Expect = 7e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 160128 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCAC 160187 ||||| ||||| || ||||||||||| || |||| |||| || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 160188 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 160247 || || || || |||||||| ||||| ||||||||||| | || || |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 160248 CAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAA 160307 | || | || | |||||| | | || | | |||||||| |||||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 160308 CTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCT 160358 ||| | |||||| |||||||| || ||||| ||| ||||| || ||| Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGCT 1 >seq623740 Length=225 Score = 102 bits (112), Expect = 9e-17 Identities = 140/191 (73%), Gaps = 10/191 (5%) Strand=Plus/Minus Query 162066 TACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT--GTCAGCGTCTTCCTTATCT 162123 || ||||| || | |||||| ||| || || |||||| || || |||||||| | Sbjct 189 TATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATTT 131 Query 162124 ACCCATTGGGTCAG-----TCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 162178 | ||| |||| | | | ||||||| || || ||| ||||| || |||||||| Sbjct 130 ATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAAT 71 Query 162179 CTTTAGATTCCTGTTGTTTCTTC-AAGGATTCCATAACTGGACCCTGAACCCCTTCCATA 162237 ||| ||||| | | ||||||| ||||||| ||||| ||||| ||||||| || |||| Sbjct 70 ATTTCGATTCATCCT-TTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATA 12 Query 162238 TGATGGGAGTT 162248 ||||||||||| Sbjct 11 TGATGGGAGTT 1 >seq472319 Length=337 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 160623 AAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCGGTCGT 160682 || || |||||||||||||||| || || || || || || |||||||| || || | Sbjct 336 AAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCAA 277 Query 160683 TTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTT 160732 || |||||||||||||| ||||||||||| ||||| | |||||||| Sbjct 276 TTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq466979 Length=342 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 162366 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 162425 ||||| |||||||| ||||||||||| ||| |||| ||||| || ||||| ||| |||| Sbjct 216 GAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCTTTGGTGTTGCT 157 Query 162426 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 162464 ||||| || || || ||| | ||||| || ||| | ||| Sbjct 156 TTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq71309 Length=1427 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 160619 TTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCGG 160678 ||| || || ||||||||||||||||| || || || || | |||||||| || Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 160679 TCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGGC 160738 || || |||||||||||||||| ||||||||||| ||||| | ||||| ||| || | Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTCTTGTC 797 Query 160739 AGCA 160742 ||| Sbjct 798 TGCA 801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554844870316000