Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq351396 257 2e-63 seq162061 170 3e-37 seq597246 145 1e-29 seq217498 134 2e-26 seq664408 122 1e-22 seq41969 122 1e-22 seq71309 87.8 3e-12 seq472319 84.2 3e-11 >seq351396 Length=451 Score = 257 bits (284), Expect = 2e-63 Identities = 267/350 (76%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 175095 GAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACC 175154 || || ||||||| ||| || || | |||||||| || || ||||| |||||||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 175155 TATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 175214 ||||| || ||||| || ||||| || || || || || ||||||||||| ||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 175215 AACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTC 175274 |||||||| || || | ||||||||||| || || ||||| || || || ||||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 175275 ACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCT 175334 || || | ||| || || ||||| |||||||| ||||||||||| |||||||| ||| Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 175335 GTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGT 175394 || | || | |||||| | || | || || ||||| ||| | | ||| ||||| | Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 175395 CTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGA 175444 ||||| |||||||||||||| || | ||||| ||||||||||| ||||| Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 99 >seq162061 Length=815 Score = 170 bits (188), Expect = 3e-37 Identities = 244/341 (72%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 176149 TTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAA 176208 || |||||||||| || || || || || || |||||| | || || |||||||| || Sbjct 211 TTTCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTC 270 Query 176209 GACTCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTG 176268 | || | || || || || || || ||||| |||||| ||||| || |||| Sbjct 271 GGTCTGTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTG 330 Query 176269 TCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTG 176328 | ||| || ||| | || ||||| || |||||| ||||||||||| || |||| Sbjct 331 TTTCTGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTG 390 Query 176329 GTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTT-CAGGGTTTCCACAACTGGACACTG 176387 | || |||||||| ||| ||||| | | |||||| || || || || || ||||| || Sbjct 391 GCGTAGCAGCAATATTTCGATTCATCCT-TTTCTTCCAAGGATTTCATAATTGGACGTTG 449 Query 176388 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATC 176447 ||||| || ||||||||||||||||| || || |||| | || || |||| || || Sbjct 450 AACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATT 509 Query 176448 CATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGA 176488 ||||| | || || ||||| || |||| ||| || || || Sbjct 510 CATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGA 550 >seq597246 Length=243 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 174636 TATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACAC 174695 ||||||||||| || ||||||||||| || |||||| ||| || ||||| | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 174696 TTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTC 174755 || |||||||| |||||||| || | | || || ||| | ||||| |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 174756 CAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAA 174815 | ||| |||| | |||||| | ||||| | |||||||| |||||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 174816 CTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGC 174865 || || ||||| |||||| | |||||||| ||| |||||||| || Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGC 2 >seq217498 Length=656 Score = 134 bits (148), Expect = 2e-26 Identities = 141/183 (77%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||||||||| |||| |||||||||||| | ||||| ||||| || || |||||||| Sbjct 348 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 407 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || |||||||| ||| | | ||| || ||||| || || || || || ||||| Sbjct 408 -TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 466 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 || || ||||||| | | ||||||||||| || |||||||||| || |||||| Sbjct 467 GCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTCTCTCTGGTGCTATTATTCCTAC 526 Query 174674 TTC 174676 ||| Sbjct 527 TTC 529 >seq664408 Length=200 Score = 122 bits (134), Expect = 1e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 174851 TGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGG 174910 ||| |||||||| || || ||||| || ||| | || || ||| | | || ||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 174911 TCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTT 174970 |||||| ||||| || | ||||| || || || ||||| | ||||||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 174971 GGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGG 175030 || ||||| ||||| || |||||| | ||||| || ||||||||||| || || || || Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 175031 TGTCTTCGGTGG 175042 ||| ||||| || Sbjct 13 TGTATTCGGCGG 2 >seq41969 Length=1890 Score = 122 bits (134), Expect = 1e-22 Identities = 150/204 (74%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 176657 TATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGAT 176716 ||||||| | | || || ||||| || | ||||| ||||||||||| ||| || || Sbjct 565 TATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGA-AT 507 Query 176717 TAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGA 176776 | ||||| ||||||| ||| ||||| ||||||||||| || || || ||| | ||||| Sbjct 506 CCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGA 447 Query 176777 AGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGA 176836 || | | || ||||||||| || |||||| || ||||| || ||||||| || Sbjct 446 GGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGA 387 Query 176837 AGAAGTTCTACCTAGAGGTAACGC 176860 || |||||||| | || ||||| Sbjct 386 GGAGGTTCTACCACGTGGAAACGC 363 >seq71309 Length=1427 Score = 87.8 bits (96), Expect = 3e-12 Identities = 109/149 (73%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 175095 GAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACC 175154 || |||| ||||| ||| || || | | |||||| || || ||||| |||||||| Sbjct 649 GAAACAATTGAAAATGAATCT---AATGAGGTTTACAATTTTGGTCAAGAGGAAGAGACT 705 Query 175155 TATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 175214 ||||| || ||| | ||||| || || || || ||||||||||| || | ||| Sbjct 706 TATAATATTGTGTTTGTGCATGGTTATTTTTTCCGATTAATCTTCCAATATGCATGTTTC 765 Query 175215 AACAACTCACGCTCACTCCACTTCTTCTT 175243 ||||||||||| || ||||||| ||||| Sbjct 766 AACAACTCACGTTCTTTCCACTTTTTCTT 794 >seq472319 Length=337 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 175130 CAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCG 175189 ||| || || ||||| ||||||| ||||| || ||||| || ||||| || || || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 175190 TTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTT 175243 || ||||||||||| ||| ||||||||||| || || | |||||||| || Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTGTT 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723851293738400