Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq351396 237 2e-57 seq162061 179 4e-40 seq664408 140 4e-28 seq597246 138 1e-27 seq41969 109 7e-19 seq466979 89.7 6e-13 seq472319 82.4 9e-11 >seq351396 Length=451 Score = 237 bits (262), Expect = 2e-57 Identities = 268/359 (75%), Gaps = 0/359 (0%) Strand=Plus/Minus Query 178476 GAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACA 178535 ||||| ||||||| ||||| || | ||||| || || || ||||| |||||||| Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 178536 TACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTC 178595 || || || || || || ||||| || || || || || ||||||||||||||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 178596 AACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTC 178655 |||||||| ||||| | ||||||||| | || || ||||||||||| |||||||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 178656 ACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCC 178715 || || | || | || || ||||| || ||||| ||||| ||||| |||||||| || Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 178716 ATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGT 178775 | | || | ||||| || || | || || ||||| || | ||||||| || | Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 178776 CTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGC 178834 || || |||||||| |||||||| || || || ||||||||||| || || || || || Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 90 >seq162061 Length=815 Score = 179 bits (198), Expect = 4e-40 Identities = 252/351 (72%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 179524 CTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC- 179582 |||||||||| || || || || || ||||||||| | | ||||||||||||||||| Sbjct 214 CTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGT 273 Query 179583 CTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTC 179642 ||| | | | | ||||| ||||| || | || |||||||| || || || || || Sbjct 274 CTGTTCAATTGCGG-CCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTT 332 Query 179643 AGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGT 179702 ||| ||||| || ||||| |||| || || |||||| || |||||| ||||| Sbjct 333 TCTGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGC 392 Query 179703 GTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAAC 179762 || || || || || | ||| | || ||| | || || || || || |||||| | ||| Sbjct 393 GTAGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 452 Query 179763 CCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCAT 179822 || || ||||||||||||||||| || || |||| | || ||||| | ||||| ||| Sbjct 453 CCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCAT 512 Query 179823 GGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACC 179873 |||| || ||||| || || | | ||| || || || ||||||||| Sbjct 513 GGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACC 563 >seq664408 Length=200 Score = 140 bits (154), Expect = 4e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 178232 TGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGG 178291 ||| |||||||| ||||| || || || || | || || ||| || | || ||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 178292 TCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCT 178351 |||||| || ||||| | ||||| | || || ||||||| ||||||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 178352 TGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGG 178411 ||| ||||| ||||| |||||||| || ||||| || ||||||||||| ||||| || || Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 178412 TGTATTCGGTGG 178423 ||||||||| || Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 178017 TATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCAC 178076 ||||| ||||| || ||||||||||| || |||| |||| || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 178077 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 178136 || || || || |||||||| ||||| ||||||||||| | || || |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 178137 CAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAA 178196 | || | || | |||||| | ||||| | | || ||||| |||||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 178197 CTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCT 178247 ||| | |||||| |||||||| || ||||| ||| |||||||| ||| Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGCT 1 >seq41969 Length=1890 Score = 109 bits (120), Expect = 7e-19 Identities = 148/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 180028 CTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGA 180087 |||||||| | | || || ||||| ||| | ||||| || ||||| || ||||| | Sbjct 566 CTATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGA-A 508 Query 180088 TCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATG 180147 || | ||||| ||||||| || |||||||| ||||||||||| || |||||| | || | Sbjct 507 TCCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACG 448 Query 180148 AAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCAG 180207 | || | ||||| ||| ||||| | ||||| || ||||| | ||||||| | Sbjct 447 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 388 Query 180208 AAGAAGTTCTGCCAAGAGGTAATGC 180232 | || ||||| ||| | || || || Sbjct 387 AGGAGGTTCTACCACGTGGAAACGC 363 >seq466979 Length=342 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 179901 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCA 179960 ||||| |||||||| ||||||||||| ||| |||| ||||| || ||||| ||| |||| Sbjct 216 GAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCTTTGGTGTTGCT 157 Query 179961 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 179999 ||||| || || || ||| | ||||| || ||| | ||| Sbjct 156 TTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq472319 Length=337 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 178512 AAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGT 178571 || || || ||||| ||||||| || || || || || || ||||| || || || | Sbjct 336 AAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCAA 277 Query 178572 TTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTT 178621 || ||||||||||||||| ||||||||||| ||||| | |||||||| Sbjct 276 TTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 600963206558400