Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq351396 266 4e-66 seq162061 208 8e-49 seq664408 152 6e-32 seq597246 113 5e-20 seq41969 109 6e-19 seq623740 100 3e-16 seq472319 93.3 5e-14 seq466979 89.7 6e-13 seq71309 84.2 2e-11 >seq351396 Length=451 Score = 266 bits (294), Expect = 4e-66 Identities = 275/360 (76%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 159006 GAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACA 159065 ||||| ||||||| || || || | |||||||| || || ||||| ||||| || Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 159066 TATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 159125 |||||||| || || || |||||||| || || || || ||||||||||| ||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 159126 AACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTC 159185 |||||||| ||||| || ||||||||| | ||||| |||||||| || || ||||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 159186 ACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCC 159245 || || | || | || ||||| |||||||| || |||||||| |||||||| || Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 159246 ATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGT 159305 | ||||| |||| ||||| || | || || ||||| ||| | | ||||| || | Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 159306 CTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 159365 || ||||||||||| ||||| || ||||| || ||||||||||| || ||||| |||||| Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 208 bits (230), Expect = 8e-49 Identities = 257/349 (74%), Gaps = 2/349 (1%) Strand=Plus/Plus Query 160202 CTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCT 160260 ||||| || || || || ||||| || |||||| | || || |||||||| || || ||| Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 160261 CATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAG 160320 || | | || ||||| ||||| || | ||||||||||| || || || ||||| Sbjct 276 GTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTC 334 Query 160321 CGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGT 160380 |||||||| || || ||| |||| || || ||||||| || || ||| ||||| || Sbjct 335 TGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 394 Query 160381 GGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCC 160440 |||||||| ||| ||||| | | ||| | ||||||||||| || |||||| | ||||| Sbjct 395 AGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 160441 CTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGG 160500 || ||||||||||||||||| || || |||| | || ||||| | || || ||||| Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 160501 CGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACC 160549 | || ||||| ||||| || | ||| || || || ||||||||| Sbjct 515 AGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACC 563 >seq664408 Length=200 Score = 152 bits (168), Expect = 6e-32 Identities = 149/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 158762 TGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGG 158821 ||| ||||| || || || || || || || ||||||| ||| | | || ||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 158822 TCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCT 158881 |||||| ||||| |||| ||||||| | || || ||||||| ||| |||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 158882 TGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGG 158941 ||||||||| ||||| ||||||||||||||||| || ||||| ||| | ||||| ||||| Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 158942 GGTATTCGGTGG 158953 |||||||| || Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 158547 TATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCAC 158606 ||||| ||||| || ||||||||||| || | || |||| || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 158607 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 158666 || || || || |||||||| ||||| ||||||||||| | || || |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 158667 CAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAA 158726 | || | || | |||||| | | || | | |||||||| ||||| |||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 158727 CTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGC 158776 ||| | ||| || |||||||| || ||||| ||| ||||| || || Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGC 2 >seq41969 Length=1890 Score = 109 bits (120), Expect = 6e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 160705 TATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGAT 160764 ||||||| | | || || ||||| || | ||||| || ||||| || || || || Sbjct 565 TATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGA-AT 507 Query 160765 TAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGA 160824 | ||||| ||||||| ||||||||||| ||||||||||| || || || | || || Sbjct 506 CCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGA 447 Query 160825 AGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGA 160884 || | ||||| ||| | ||| || || || || ||||| || |||| ||||| || Sbjct 446 GGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGA 387 Query 160885 AGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 || ||||| || | || ||||| ||||||| Sbjct 386 GGAGGTTCTACCACGTGGAAACGCTCTTTAAT 355 >seq623740 Length=225 Score = 100 bits (110), Expect = 3e-16 Identities = 138/191 (72%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 160276 TTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTT--GTCAGCGTATTCCTCATC 160333 ||| ||||| || | |||||| ||| || || || ||| || |||||||| || Sbjct 190 TTATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATT 132 Query 160334 TACCCATTGGGTCAG-----TCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 160388 || ||| |||| | | | ||||||| || || ||| ||||| || ||||||| Sbjct 131 TATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAA 72 Query 160389 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATA 160448 | ||| ||||| | | ||| | ||||||||||| || |||||| | ||||| || |||| Sbjct 71 TATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATA 12 Query 160449 TGATGGGAGTT 160459 ||||||||||| Sbjct 11 TGATGGGAGTT 1 >seq472319 Length=337 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 159041 CAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCG 159100 ||| || || ||||| ||||| | |||||||| || || || |||||||| || || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 159101 TTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTT 159151 || ||||||||||| ||| ||||||||||| ||||| || |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq466979 Length=342 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 160577 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 160636 ||||| |||||||| ||||||||||| ||| |||| ||||| || ||||| ||| |||| Sbjct 216 GAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCTTTGGTGTTGCT 157 Query 160637 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 160675 ||||| || || || ||| | ||||| || ||| | ||| Sbjct 156 TTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq71309 Length=1427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 159038 TTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCGG 159097 |||||| || || ||||| ||||| || |||||||| || | |||||||| || Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 159098 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGC 159157 || || ||||||||||| || | ||||||||||| ||||| || ||||| ||| | | Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTCTTGTC 797 Query 159158 TGCA 159161 |||| Sbjct 798 TGCA 801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547873014214400