Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq351396 244 1e-59 seq162061 215 6e-51 seq664408 167 3e-36 seq597246 145 9e-30 seq41969 127 2e-24 seq217498 111 2e-19 seq623740 107 2e-18 seq63256 96.9 4e-15 seq466979 91.5 2e-13 seq472319 82.4 9e-11 seq71309 82.4 9e-11 >seq351396 Length=451 Score = 244 bits (270), Expect = 1e-59 Identities = 252/330 (76%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 179518 GGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTC 179577 ||||| || || || ||||| |||||||| ||||| || || || || ||||| || || Sbjct 418 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 359 Query 179578 GGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTT 179637 || || || |||||||||||||| || |||||||| || ||||| ||||||||| | Sbjct 358 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 299 Query 179638 GCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTC 179697 ||||| ||||| || || || ||||||||||||||| | || | || ||||| ||| Sbjct 298 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 239 Query 179698 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAAC 179757 ||||| || |||||||| |||||||| || | |||| ||||||| || || |||| Sbjct 238 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 179 Query 179758 ACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAAC 179817 || ||||| || | | ||||| || | | ||||||||||| ||||| || ||||| Sbjct 178 ACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 119 Query 179818 GCACACAACTTCCCACTCGACCTTGCTGCT 179847 || ||||||||||| || ||||| |||||| Sbjct 118 GCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 215 bits (238), Expect = 6e-51 Identities = 260/351 (74%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 180322 CTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTC 180381 |||||||||| || || || ||||| || || ||| ||||||| |||||||| || || Sbjct 214 CTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGT 273 Query 180382 TTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCA 180441 | || | || ||||| ||||| || ||||||||||||| ||||| || ||||| Sbjct 274 CTGTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTT 333 Query 180442 GCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGG 180501 ||||| || || || |||||||| || || ||||||||||||| || |||||| | Sbjct 334 CTGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCG 393 Query 180502 TAGCAGCAATCTTTAGATTCCTACTCTTTCTT-CAGGGTTTCCACAACTGGACCCTCAAC 180560 |||||||||| ||| ||||| | || |||||| || || || || || ||||| | ||| Sbjct 394 TAGCAGCAATATTTCGATTCATCCT-TTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 452 Query 180561 CCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCAT 180620 || || ||||||||||||||||| || || |||| | || |||||| || || ||| Sbjct 453 CCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCAT 512 Query 180621 GGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACC 180671 || | || || || ||||| || | ||| || || || ||||| ||| Sbjct 513 GGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACC 563 >seq664408 Length=200 Score = 167 bits (184), Expect = 3e-36 Identities = 152/192 (79%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 179244 TGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGG 179303 |||||||||||| || || || || ||||| | ||| || ||| | | || ||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 179304 TCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCT 179363 |||||| |||||||||| ||||||| | || || ||||||| ||| |||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 179364 TGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGG 179423 ||||||||| ||||| ||||||||||||||||| || ||||| ||| | ||||| ||||| Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 179424 GGTATTCGGTGG 179435 |||||||| || Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 179029 TATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACAC 179088 ||||||||||| || |||||||||||| || | || | ||| || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 179089 TTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTC 179148 || ||||| || |||||||| ||||| | ||||||||| | || || |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 179149 CAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAA 179208 | || | || | |||||| | | || | | |||||||| |||||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 179209 CTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGC 179258 ||| || |||| | ||||||||||| ||||| |||||||||||| || Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGC 2 >seq41969 Length=1890 Score = 127 bits (140), Expect = 2e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 180826 CTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGA 180885 |||||||| | | || || ||||| ||| | ||||| || ||||| || || || | Sbjct 566 CTATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTTTCCCAGGA-A 508 Query 180886 TCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATG 180945 || | ||||| ||||||| ||| || ||||| ||||||||||| || || || || || | Sbjct 507 TCCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACG 448 Query 180946 AAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTG 181005 | || | ||||| ||| ||||| || ||||| || || ||||| | || ||||||| Sbjct 447 AGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTG 388 Query 181006 AAGAAGTTCTACCAAGAGGTAACGC 181030 | || ||||||||| | || ||||| Sbjct 387 AGGAGGTTCTACCACGTGGAAACGC 363 >seq217498 Length=656 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||| | ||| |||| ||| | || ||| | || | || ||||||||||| || Sbjct 321 TTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 380 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| ||||| || || | || ||| | || || || Sbjct 381 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 439 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || ||||| || || ||||||| | | ||||||||||| Sbjct 440 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 499 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTC 179069 || ||||||||||| || | || | ||| Sbjct 500 TATTCTCTCTGGTGCTATTATTCCTACTTC 529 >seq623740 Length=225 Score = 107 bits (118), Expect = 2e-18 Identities = 142/192 (74%), Gaps = 10/192 (5%) Strand=Plus/Minus Query 180398 TTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTT--GTCAGCGTATTTCTCATC 180455 ||| ||||| || |||||||| ||| ||||| || ||| || ||||| || || Sbjct 190 TTATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATT 132 Query 180456 TACCCACTGGGTCAG-----TCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAA 180510 || |||||||| | | | ||||||||||||| || |||||| |||||||||| Sbjct 131 TATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAA 72 Query 180511 TCTTTAGATTCCTACTCTTTCTTC-AGGGTTTCCACAACTGGACCCTCAACCCCTTCCAT 180569 | ||| ||||| | || ||||||| | || || || || ||||| | ||||| || ||| Sbjct 71 TATTTCGATTCATCCT-TTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 13 Query 180570 ATGATGGGAGTT 180581 |||||||||||| Sbjct 12 ATGATGGGAGTT 1 >seq63256 Length=1526 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 180249 CTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTC 180308 ||||| ||||| || || | || || |||| || ||||| || | || || | Sbjct 21 CTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTTTA 80 Query 180309 TGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTT 180368 |||| || || ||||||||||| || || || ||||| || || ||| ||||||| ||| Sbjct 81 TGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTT 140 Query 180369 GAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATC 180428 ||||| || || | || | || ||||| ||||| || ||||||||| ||| ||| Sbjct 141 GAACTTGCTCGGTCTGTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGATCCAATC 200 Query 180429 GCTGTATTTGT 180439 || || ||||| Sbjct 201 GCGGTTTTTGT 211 >seq466979 Length=342 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 180688 CAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 180747 |||| |||| || |||||||| || ||||||||||| ||| |||| ||||| || |||| Sbjct 227 CAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCT 168 Query 180748 TCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 180797 | ||| |||| ||||| || || || ||| | ||||| || ||| | ||| Sbjct 167 TTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq472319 Length=337 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 179524 AAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGT 179583 || || || ||||| ||||||| ||||| || || || || ||||| || || || | Sbjct 336 AAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCAA 277 Query 179584 TTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTT 179633 || |||||||||||||| || |||||||| || ||||| |||||||| Sbjct 276 TTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq71309 Length=1427 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 179520 TTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGG 179579 ||| || || || ||||| |||||||| ||||| || || | ||||| || || Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 179580 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGC 179639 || || |||||||||||||||| || ||||||||||| ||||| ||||| ||| | | Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTCTTGTC 797 Query 179640 TGC 179642 ||| Sbjct 798 TGC 800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605247232838400