Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq343112 120 4e-22 seq88849 84.2 3e-11 >seq343112 Length=461 Score = 120 bits (132), Expect = 4e-22 Identities = 176/249 (71%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 68950 CCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCA 69009 || ||||||| | ||| ||| ||||| || || || |||||||||| | | || Sbjct 386 CCTTTATATGATGAATAGGGTTGTTCCTTTTTGGCAAGCTCACAACTTGTTTTGCACGCC 327 Query 69010 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAAT 69069 | || || || |||| ||||| | ||| ||||| | || |||||| | || |||||| Sbjct 326 GCATAGTAGATATTTTCAAAAATTTCCTTGTTGAGCTGTTTTGCTTCGGGGCTGTCGAAT 267 Query 69070 GGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTA 69129 ||||| | | ||||||||||| || | ||| || || ||||||||||| || | | Sbjct 266 GGATATCTCATTAATATAAATGCATCGGCGAGTCCTTGCACACCAATACCGATTGGCCGA 207 Query 69130 TGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 69189 || | | | || ||| |||| || || || ||||||| ||| || || ||||| || Sbjct 206 TGACGCATGTTCGAATTTTCTGCCTCCTTAACTGGATAATGATTTATGTCAATAATCTTG 147 Query 69190 TTAAGATTT 69198 || |||||| Sbjct 146 TTGAGATTT 138 >seq88849 Length=1251 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || || ||||| || | || | ||||| || || ||||| Sbjct 330 GCAGGCGAAGTCGCAGTGGAGCCCCTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAG 389 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| || || || || |||| Sbjct 390 GCCGGGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 448 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 449 AGATGCCCTCGAC 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 681188738695200