Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq112278 96.9 3e-15 seq13106 96.9 3e-15 >seq112278 Length=1071 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 |||||||| ||| ||||| || | |||||||| | |||||| | |||| ||||||| Sbjct 390 CAGTTTTATGTTGAGAATGGAGAGTTATCATGTCAGATATATCAACGCTCAGCTGACATG 449 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 ||||| || || || || ||||| ||| ||||||||| || || | ||||||||| || Sbjct 450 GGACTTGGCGTGCCATTCAACATTGCGTCTTATGCTCTTCTGACATGTATGATTGCGCAA 509 Query 41199 GTT 41201 ||| Sbjct 510 GTT 512 >seq13106 Length=3111 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 |||||||| ||| ||||| || | |||||||| |||||||| | |||| ||||||| Sbjct 2396 CAGTTTTATGTTGAGAATGGAGAGTTATCATGTCAGATGTATCAACGCTCAGCTGACATG 2455 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 ||||| || || || || ||||| || ||||||||| || || | ||||||||| || Sbjct 2456 GGACTTGGCGTGCCATTCAACATTGCATCTTATGCTCTTCTGACATGTATGATTGCGCAA 2515 Query 41199 GTT 41201 ||| Sbjct 2516 GTT 2518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394229027410900