Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq307656 114 1e-20 seq6868 89.7 4e-13 seq138762 86.0 5e-12 >seq307656 Length=504 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||||| | | |||| | || || | ||||| ||| Sbjct 496 GTTGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCTAATTGTTTGCCG 437 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| ||||||||||||| || || ||||| | || || || || |||||| |||| Sbjct 436 GCGAAAATGAGACGCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGGATCTTCGATTTC 377 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || || || || || || |||| ||| ||||||| ||| Sbjct 376 ACATTGTCAATGGTGTCAGACGCCTCTACCTCAAGGGTAATAGTTTTACCCGTCAAAGTC 317 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || ||||||||||||||| || Sbjct 316 TTGACAAAGATTTGCATACCT 296 >seq6868 Length=3892 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | || | |||| || | ||| || || || || || ||||||||| Sbjct 2880 TGCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 2939 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| |||| || ||||| || |||||| | ||||| ||||| || ||||||| Sbjct 2940 CGAGCGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCG 2999 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||| || || | | | || | ||||| || || | Sbjct 3000 GAATCCCTTCCTTGTCCTGGATTTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCA 3059 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 3060 CCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 3108 >seq138762 Length=915 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG-TTTAC 27108 ||| || || || || | |||||||| | | |||| |||| |||||||| ||| | Sbjct 682 CGTGGACTCCTTCTGCACGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 623 Query 27109 CGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTT 27168 ||||| | ||||||||||| || ||||||| | |||| || || |||||| | Sbjct 622 CGGCGAAGATGAGACGCTGCTGGCCCGGCGGGATGCCCTGCTTGTCCTGGATCTTAGCCT 563 Query 27169 TCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAG 27228 | | | | || | ||||| || || || || || || || | ||||||||||| | Sbjct 562 TAACGTTGTCAATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGG 503 Query 27229 TTTTCACAAAGATTTGCAT 27247 | ||||| ||||| ||||| Sbjct 502 TCTTCACGAAGATCTGCAT 484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421484328392160